BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311256
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
AT1G01880.1 | Symbols: | 5'-3' exonuclease family protein | ch... 1459 0.0
> AT1G01880.1 | Symbols: | 5'-3' exonuclease family protein |
chr1:306480-309109 REVERSE LENGTH=1996
Length=1996
Score = 1459 bits (790), Expect = 0.0
Identities = 889/938 (95%), Gaps = 2/938 (0%)
Strand=Plus/Plus
Query 1 ATGGGTGTGGGAGGCAATTTCTGGGATTTGCTGAGGCCTTATGCTCAACAACAAGGGTTT 60
||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 119 ATGGGTGTGGGAGGCAATTTCTGGGATTTGCTGAGACCATATGCTCAGCAACAAGGCTTT 178
Query 61 GATTATCTCAGAAACAAACGCGTCGCTGTTGATCTCTCCTTCTGGATCGTTCAGCATGAA 120
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 179 GATTTTCTCAGAAACAAACGAGTCGCTGTTGATCTCTCCTTCTGGATCGTTCAGCATGAA 238
Query 121 ACCGCTGTTAAGGGTTTTGTCCTTAAACCTCACCTCAGACTCACTTTCTTCCGTACTATC 180
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 ACCGCTGTTAAGGGTTTCGTCCTTAAACCTCACCTCCGACTCACTTTCTTCCGTACTATC 298
Query 181 AACCTCTTCTCAAAGTTTGGAGCGTATCCAGTTTTTGTGGTTGATGGAACACCTTCACCT 240
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 299 AACCTCTTCTCAAAGTTTGGAGCGTACCCGGTTTTTGTGGTTGATGGAACACCATCACCT 358
Query 241 CTAAAATCTCAGGCGAGAATCTCCAGGTTTTTCCGGTCTTCTGGAATTGATACTTGTAAT 300
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 359 TTGAAATCTCAGGCGAGAATCTCCAGGTTTTTCCGTTCTTCTGGAATTGATACTTGTAAT 418
Query 301 CTGCCTGTGATTAAAGATGGCGTCTCCGTTGAGAGAAATAAGCTGTTTTGTGAATGGGTT 360
|| ||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct 419 CTACCTGTGATTAAAGATGGTGTCTCGGTTGAGAGAAACAAGCTGTTTTCTGAATGGGTT 478
Query 361 AAGGAATGTGTGGAGCTACTCGAATTGCTCAGTATTCCGGTGCTGAAAGCAAATGGTGAG 420
| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 479 AGGGAATGTGTGGAGCTACTCGAATTGCTCGGTATTCCGGTGCTGAAAGCTAATGGTGAG 538
Query 421 GCTGAAGCTCTCTGTGCACAGTTAAACAGCGAAGGTTATGTGGATGCTTGCATTACTCCT 480
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 539 GCTGAAGCTCTCTGTGCACAGTTAAACAGCCAAGGTTTTGTGGATGCTTGCATTACTCCT 598
Query 481 GATAGTGATGCTTTCCTATTTGGTGCTAAGTGCGTGATCAAAGATATCAAGCCTAATTCA 540
||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 599 GATAGTGATGCTTTCCTTTTTGGTGCTATGTGCGTGATCAAAGACATCAAGCCTAATTCA 658
Query 541 AGAGAGCCTTTTGAATGCTACCATATGTCAGATATTGAGTCTGGCCTTGGTCTGAAGCGG 600
||||| |||||||||||||||||||||||| |||| ||||||||||| ||| ||||||||
Sbjct 659 AGAGAACCTTTTGAATGCTACCATATGTCACATATCGAGTCTGGCCTCGGTTTGAAGCGG 718
Query 601 AAACACTTGATAGCTATTTCTCTATTGGTTGGAAATGACTATGATTCAGGCGGTGTTCTT 660
||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 719 AAACACTTGATTGCTATTTCTCTATTGGTGGGAAACGATTATGATTCAGGCGGTGTTCTT 778
Query 661 GGGATTGGTGTGGATAAAGCACTCCGCATTGTTCGTGAGTTTTCTGAAGA-CGAGATACT 719
||||||||||||||||||||||| |||||||||||||||||||||||||| | || ||||
Sbjct 779 GGGATTGGTGTGGATAAAGCACTGCGCATTGTTCGTGAGTTTTCTGAAGACCAAG-TACT 837
Query 720 TGAAAGACTACAGGACATTGGAAAAGGGTTGAAACCTACAGTTCCTGGTGGAATCAAATC 779
|||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct 838 TGAAAGACTACAGGACATTGGAAATGGGTTGCAACCTGCAGTTCCTGGTGGAATCAAATC 897
Query 780 TGTGGATGATGGTGAAGAATTCCGCTCAGAGATGaaaaaaaGATCTCCTCACTGTTCCCG 839
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CGGGGATGATGGTGAAGAATTCCGCTCAGAGATGAAAAAAAGATCTCCTCACTGTTCCCG 957
Query 840 TTGTGGACACCTGGGCAGCAAGAGAACTCATTTTAAGTCCTCTTGTGAGCATTGTGGTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 958 TTGTGGACACCTGGGCAGCAAGAGAACTCATTTTAAGTCCTCTTGTGAGCACTGCGGTTG 1017
Query 900 TGATAGTGGTTGTATTAAGAAACCATTAGGGTTTAGAT 937
|||||||||||| ||||| |||||||||||||||||||
Sbjct 1018 TGATAGTGGTTGCATTAAAAAACCATTAGGGTTTAGAT 1055
Score = 1280 bits (693), Expect = 0.0
Identities = 799/847 (94%), Gaps = 19/847 (2%)
Strand=Plus/Plus
Query 934 AGATTTAAAGGAACAGAAGAAAACC-ATGATTGGTGGATCAAAGTCTGTGATAAGATTGC 992
|||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1084 AGATTTAAGGGAACAAAAGAAAACCAATGATTGGTGGATCAAAGTCTGCGATAAGATTGC 1143
Query 993 TCTAGCGCCAGAATTTCCCAACAGAAAGATTATTGAACTCTATCTATCCGATGGTTTGAC 1052
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1144 TCTAGCGCCAGAGTTTCCCAACAGAAAGATTATTGAACTTTATCTATCCGATGGTTTGAT 1203
Query 1053 GGCAGAAGATGGCTCGTCAATGTCTTGGGGAACTCCTGATACTGGAATGCTAGTGGATCT 1112
| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 GACAGGAGATGGATCGTCAATGTCTTGGGGAACTCCTGATACTGGAATGCTAGTGGATCT 1263
Query 1113 CATGGTTTTCAAACTGCACTGGGACCCATCTTATGTTAGAAAAATGTTGCTTCCGATGTT 1172
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1264 CATGGTTTTCAAACTGCACTGGGACCCATCTTATGTTAGAAAAATGTTGCTTCCGATGCT 1323
Query 1173 GTCGACCATTTATCTAAGAGAAAAGGCAAGAAACAGCACAGGAAACGCTTTGTTATGTGA 1232
||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 1324 GTCGACCATTTATCTGAGAGAAAAGGCAAGAAACAACACAGGATACGCTTTGTTGTGTGA 1383
Query 1233 TCAATACGAATTTCATTCAATCAAGTGCATAAAAACTAGATATGGGCATCAGTCTTTTGT 1292
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1384 TCAATACGAATTTCATTCAATCAAGTGCATAAAAACTAGATATGGGCATCAGTCCTTTGT 1443
Query 1293 GATAAGGTGGAGAAAACCCATATCTATAAGTGGTTATAGTCACAGTCAAAGCGAGCCAGA 1352
||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||
Sbjct 1444 AATAAGGTGGAGAAAACCCAAATCTACAAGTGGTTATAGTCATAGTCACAGCGAGCCAGA 1503
Query 1353 AGAATCAATTGTTGTATTGGAAGAAGAACTGGTGGAAGAAGAAGAGTCTGTTGATCCGTT 1412
|||||||||||||||||||||||||||| | |||| | ||||||||||||||
Sbjct 1504 AGAATCAATTGTTGTATTGGAAGAAGAA--G----AAGA-G-----TCTGTTGATCCGTT 1551
Query 1413 AGATGGTTTAAATGAACCTCAGGTGCAAAATGATAATGGTGACTGCTTCTTGCTAACTGA 1472
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GGATGGTTTAAATGAACCTCAGGTGCAAAATGATAATGGTGACTGCTTCTTGCTAACTGA 1611
Query 1473 TGAATGCATAGGACTTGTTGAGTCTGCTTTCCCTGATGAAACAGAGCATTTTCTACATGA 1532
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TGAATGCATAGGACTTGTTCAGTCTGCTTTCCCTGATGAAACAGAGCATTTTCTACATGA 1671
Query 1533 GAAGAAACTGAGAGAGTCGAAAAAGAAGAATGTTTCTGAAGAA-A--CAGCAACACCAAG 1589
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1672 GAAGAAACTGAGAGAGTCGAAAAAGAAGAATGTTTCTGAAGAAGAAACAGCAACACCAAG 1731
Query 1590 ACCAACAACAATGGGTGTACAAAGAAGCATTACCGATTTCTACCGTTCAGCGAA-A--GC 1646
| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1732 AGCAACAACAATGGGTGTACAAAGAAGCATTACCGATTTCTACCGTTCAGCGAAGAAAGC 1791
Query 1647 AGCACCAGGTCAAAGTATAGAGACTGGCGGGAGTTCAAGAGCTTCTGCGGAAAAGAAGAG 1706
|||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1792 AGCAGCAGGTCAAAGTATAGAGACAGGCGGGAGTTCAAAAGCTTCTGCGGAAAAGAAGAG 1851
Query 1707 ACAGGCAACTTCTACTAGTAGTAGTAACCTTTCAAAGTCTGTAAGGCGTCGTCTCTTGTT 1766
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1852 ACAGGCAACTTCTACTAGTAGTAGTAACCTTACAAAGTCGGTCAGGCGTCGTCTCTTGTT 1911
Query 1767 TGGATAG 1773
|||||||
Sbjct 1912 TGGATAG 1918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87700352115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5