BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311422
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT1G03210.1 | Symbols: | Phenazine biosynthesis PhzC/PhzF prot... 1254 0.0
AT4G02850.1 | Symbols: | phenazine biosynthesis PhzC/PhzF fami... 219 5e-56
> AT1G03210.1 | Symbols: | Phenazine biosynthesis PhzC/PhzF protein
| chr1:782948-784240 FORWARD LENGTH=861
Length=861
Score = 1254 bits (679), Expect = 0.0
Identities = 808/867 (93%), Gaps = 21/867 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAGAAAAAGAGAGTCAAGTACTTCATTGTTGATGCATTCGCTGAATCTGCCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGGAGAAAAAGAGAGTCAAGTACTTCATTGTTGATGCATTCGCTGAATCTGCCTTC 60
Query 61 AAAGGGAATCCAGCTGCTGTTTGCTTTCTGGACGACGATAACGATAACCAGAGAGACGAC 120
||||||||||||||||||||||||||||| | || | |||||||| |||||||||||
Sbjct 61 AAAGGGAATCCAGCTGCTGTTTGCTTTCT--A-GA--A-GACGATAACGAGAGAGACGAC 114
Query 121 GCGTGGCTTCAGTCTCTTGCTGCCGAGTTCAACCTCTCCGAGACTTGTTTCCTCACTCCG 180
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 115 GCGTGGCTTCAGTCTCTTGCCACCGAGTTCAATATCTCCGAGACTTGTTTCCTCACTCCG 174
Query 181 ATCATCGGAGACTTCCCTCGATTCCGTCTCCGTTGGTTCACTCCAGTCGCTGAGGTGGAT 240
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATCATCGGAGACTTGCCTCGCTTCCGTCTCCGTTGGTTCACTCCAGTCGCTGAGGTGGAT 234
Query 241 TTGTGTGGTCATGCAACTTTAGCATCTGCTCACGTTCTCTTCTCAACTGGTTTGATTGTT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 235 TTGTGTGGTCATGCAACTTTAGCATCTGCTCACGTTCTCTTCTCAACTGGTTTGGTTGGT 294
Query 301 TCAGAAACAGTTGAGTTCGCCACATTATCAGGGGCTCTAACAGCTAAACATGTC-AAAAT 359
||||| ||||||||||||| ||||||||||||| |||||||||||||||| || |||||
Sbjct 295 TCAGAGACAGTTGAGTTCGACACATTATCAGGGATTCTAACAGCTAAACATCTCAAAAAT 354
Query 360 --TGATGAT------G----AA--ATCGAATTGGATTTCCCTCTTGTACCTACTTTTGAA 405
||||||| | || |||||||||||||||||| |||| || || | ||||
Sbjct 355 GATGATGATGGAGAAGAATCAAGTATCGAATTGGATTTCCCTGTTGTTCCAACATATGAA 414
Query 406 GTCAACTACATTGATGATGATCTCTCTTTGTTCTCCAAAGCCTTGAATGGAGCTACCATT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GTCAACTACATTGATGATGATCTCTCTTTGTTCTCCAAAGCCTTGAATGGAGCTACCATT 474
Query 466 GTTGATGTTAAAGCCACAAAGAAGGACATCCTCGTTGTGCTTTCATCTTGGGAAGCTGTC 525
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 475 CTTGATGTCAAAGCCACAAAGAAAGACCTCCTCGTTGTGCTTTCATCTTGGGAAGCTGTT 534
Query 526 ATTGAATTGCAGCCAAGATTAGATGAGATATCGAAATGCCCTTGTGAAGGAATGATGGTG 585
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATTGATTTGAAGCCAAGATTAGATGAGATATCGAAATGCCCTTGTGAAGGAATGATGGTG 594
Query 586 TCTGCCGCTGCTTCTGCTGAATCTACTTATGATTTCTGTAGTCGCTACTTTGCCCCGAGA 645
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ACTGCCGCTGCTTCTGATGGATCTACTTATGATTTCTGTAGTCGCTACTTTGCCCCGAGA 654
Query 646 TTCGGAATCAATGAGGACCCTGTTACTGGAAGTGCGCATTGTGCCTTAGCACATTACTGG 705
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 655 TTCGGAATCAATGAGGACCCTGTTACTGGAAGTGCTCATTGTGCTTTAGCTCATTACTGG 714
Query 706 AGCCTCAAGATGAACAAGTGTGATTTCTTCGCCTACCAGGCTTCAAGCAGAGGGGGAACG 765
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 715 AGCCTCAGGATGAACAAGTGTGATTTCTTCGCCTACCAGGCTTCAAGCAGAGGAGGAACG 774
Query 766 TTGAAGGTGCACCTGGACAAAGAGAAGCAGAGGGTTCTGCTCAGAGGCAAAGCAGTCACT 825
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 775 TTGAAGGTGCACCTGGACAAAGAGAAGCAGAGGGTTCTACTGAGAGGCAAAGCAGTCACT 834
Query 826 GTTATGGAAGGTTATGTCTTAGTTTGA 852
||||||||||||||||||||||| |||
Sbjct 835 GTTATGGAAGGTTATGTCTTAGTGTGA 861
> AT4G02850.1 | Symbols: | phenazine biosynthesis PhzC/PhzF family
protein | chr4:1266463-1268612 REVERSE LENGTH=1036
Length=1036
Score = 219 bits (118), Expect = 5e-56
Identities = 291/371 (78%), Gaps = 26/371 (7%)
Strand=Plus/Plus
Query 493 ATCCTCGTTGTGCTTTCATCTTGGGAAGCTGTCATTGAATTGCAGCCAAGATTAGATGAG 552
||| ||||||||||||||||||||||| ||||||||||||| ||||||||| | ||| |
Sbjct 605 ATCATCGTTGTGCTTTCATCTTGGGAATCTGTCATTGAATTTCAGCCAAGAGTGGAT--G 662
Query 553 ATATC--GAAATGCCCTTGTGAAG-GAATGATGGTGTCTGCCGCTGCTTCTGCT---GAA 606
||||| |||||||||| | ||| | ||||| ||| | |||||||| || || | |
Sbjct 663 ATATCGTGAAATGCCCTGGCAAAGTG-ATGAT--TGT-TACCGCTGCTGCTCCTCAAGGA 718
Query 607 TCTACTTATGATTTCTGTAGTCG-CTACTTTGCCCCGAGATTCGGAATCAATGAGGACCC 665
||| ||| ||| ||||| ||||| || |||||| || | | | || ||||||||||| |
Sbjct 719 TCTCCTTTTGACTTCTGCAGTCGACT-CTTTGCTCCTAAACTAGGGCTCAATGAGGACTC 777
Query 666 TGTTA-CTGGAAGTGCGCATTGTGCCTTAGCACATTACTGGAGCCTCAAGATGAACAAGT 724
|| || ||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 778 TG-TATGTGGAAGTGCACATTGTTCATTAGCACATTACTGGAGCCTCAAGATGAACAAGT 836
Query 725 GTGATTTCTTCGCCTAC-CAGGCTTCAAGCAGAGG-G-GGAACGTTGAAGGTGCACC-TG 780
|||||||| |||| | | |||||| ||| || | ||||| | ||||| || ||
Sbjct 837 GTGATTTCGTCGCTTTTGC-GGCTTC--GCAAAGAAGTGGAACACTCAAGGTTCATTATG 893
Query 781 GACAAAGAGAAGCAGAGGGTTCT-GCTCAGAGGCAAAGCAGTCACTGTTATGGAAGGTTA 839
| || ||||||||||| || || ||| | || ||||| || ||||| ||| |||| |
Sbjct 894 -ATAAGGAGAAGCAGAGAGT-CTTGCTTACCGGGAAAGCTGTGACTGTCATGAAAGGCTC 951
Query 840 TGTCTTAGTTT 850
| |||||||||
Sbjct 952 TATCTTAGTTT 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5