BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg311450 Length=2415 Score E Sequences producing significant alignments: (Bits) Value AT1G03530.1 | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1... 3210 0.0 > AT1G03530.1 | Symbols: ATNAF1, NAF1 | nuclear assembly factor 1 | chr1:880496-883391 REVERSE LENGTH=2601 Length=2601 Score = 3210 bits (1738), Expect = 0.0 Identities = 2245/2469 (91%), Gaps = 117/2469 (5%) Strand=Plus/Plus Query 1 ATGGTTGGATTTCCCCCTAATCCAGCTATAACAGTTAAAGAAGAGCTAGCTTTGCAAGTT 60 ||||||||||||||| |||||| ||| | ||| ||| ||||||||||| |||||||||| Sbjct 54 ATGGTTGGATTTCCCGCTAATCAAGCAAAAACCGTTGAAGAAGAGCTACCTTTGCAAGTC 113 Query 61 GTAGTCGATCAAGACCCCAAGGTAAAAACTTTCAAGGACTCTATCGATTTCCCCTCCATC 120 |||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||| Sbjct 114 GTAGCCGATCAAGACCCCAAGGTAAAAACTTTCAAGGACTCTTTTGATTTCCCTTCCATC 173 Query 121 GATTCCTATCTGGATTTCGATTCCGTCACTTGGT-TGGGGAATTATCGGAACGTTGAGGA 179 ||||||| || |||||||||||| ||||||||| | | || | |||||||||||||||| Sbjct 174 GATTCCTTTCCGGATTTCGATTCTATCACTTGGTCT-GAGAGTAATCGGAACGTTGAGGA 232 Query 180 GTTTAGCATAGAAGATACGGACTTTGATTTCTTTGAGGACGGA-ATGGAGATACCTCAAG 238 |||||||||||||||||||||||||||||||||||| || | |||||||||||||||| Sbjct 233 TTTTAGCATAGAAGATACGGACTTTGATTTCTTTGAGTAC-CACATGGAGATACCTCAAG 291 Query 239 AAGGCGTTGTTACTGTTAGC---G----GTGT------AAT--G----C-G----TCCTG 274 ||| ||||||||||||||| | |||| ||| | | | | ||| Sbjct 292 AAGATGTTGTTACTGTTAGCGATGTAATGTGTCCGGAGAATCAGACTACTGTTAATTCTG 351 Query 275 AGTCGATTGAAGTAAAGCCTGA-G-CTTT-GTGATGACATGTCTGGGGAAGTTGGTGTGA 331 |||||||||| | ||||| ||| | |||| ||||||||||||||||||||||||||||| Sbjct 352 AGTCGATTGAGGGAAAGCTTGAGGTCTTTAATGATGACATGTCTGGGGAAGTTGGTGTGA 411 Query 332 GTTTGGTTAGGTCTGAGCCGATGGTTGAAGTAAAGCCTGTGCTTTGTGATGTCATGTCTG 391 ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 412 GTTCGGTTAGGTCTGAGTCGATGGTTGAAGTAAAGCCTGTGCTTTGTGATGTCATGTCTG 471 Query 392 AGGAAGTTGGAGTGAGCTCAATTAAGTCTGAGTCGTTGGTTGAGGTAGAGCCCAATGTTT 451 ||||||||||||| | || | || ||||||||||||||||||||||| Sbjct 472 AGGAAGTTGGAGT--G--------AG-C----TC---GGTTGAGGTAGAGCCCAATGTTT 513 Query 452 GTGTTGACATGTCTGCAAACGGTGGGGATGAACCAGCAGTGAAAGATTCAGAACCGGTTG 511 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 514 GTGTTGAGATGTCTGCAAACGGTGGGGATGAACCAGCAGTAAAAGATTCAGAACCGGTTG 573 Query 512 TTTCTGAAAACTCTAGGTCAATGGAAGGTGAGACTGAGCCAGTTGTTGTGTCTG-T---T 567 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | Sbjct 574 TTTCTGAAAACTCGAGGTCAATGGAAGGTGAGACTGAGCCAGTTGTTGTGTCTGATGCGT 633 Query 568 C-----CTTGTCCCACCATGGATTTGGATGAATCAGGGTTGAAGAAAACAGATGAGAGTT 622 | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 634 CTGTTGCTTGTCCCACCATGGATTTGGATGAATCAGGGTTGAAGAAAACTGATGAGGGTT 693 Query 623 TGGCTTGTTCTATTGAAGTAGGGTTGAAGAAGGTAAGTTTGGCCATGGATGATGATGAGA 682 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 694 TGGCTTGTTCTATTGAAGTAGGGTTGGAGAAGGTAAGTTTGGCCGTGGATGATGATGAGA 753 Query 683 AGAGTGATGGGGATAAGGGAAAAATTGATTCTGCTGAGTCTGACAGTGAAACCTCGAGCT 742 ||||||||| || |||||| |||| ||||||||||||||||| || ||||||||||||| Sbjct 754 AGAGTGATGAGGCTAAGGGGGAAATGGATTCTGCTGAGTCTGAGAGCGAAACCTCGAGCT 813 Query 743 CTTCTTCAAGCAGTAGTGATAGTAGTAGCAGtgaagaagaggagagtgatgaggatgaga 802 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 814 CTTCTGCAAGCAGTAGTGATAGTAGTAGCAGTGAAGAAGAGGAGAGTGATGAGGACGAGA 873 Query 803 gcgacgaagaggaaaagaagaaggaagaaaagtttgaagaTCACATGGTTATGGGGAAAG 862 ||||| |||||||||| ||||||||||||||||||| | | ||||||||| ||||||||| Sbjct 874 GCGACAAAGAGGAAAATAAGAAGGAAGAAAAGTTTG-A-A-CACATGGTTGTGGGGAAAG 930 Query 863 AGGATGATTTAGCAGGGGAACTTGAAGAGGGTGAGATAGAGAATTTAgatgaggagaatg 922 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 931 AGGATGATCTAGCAGGGGAACTTGAAGAGGGTGAGATAGAGAATTTAGATGAGGAGAATG 990 Query 923 gggatgacgaaattgaggat---gacga--a-gatgatgatgctgatgatgac---gatg 973 |||||||||| ||||||||| || || | |||||||||| |||||||||| |||| Sbjct 991 GGGATGACGATATTGAGGATGAGGATGATGATGATGATGATGATGATGATGACGATGATG 1050 Query 974 a--tgaa-gcgatggttgcttggagcaatgatgaggatgatgaCCTCGGTTTACAAACAA 1030 | |||| | |||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1051 ATGTGAATGAGATGGTTGCTTGGAGCAATGATGAGGATGATGACCTTGGTTTGCAAACAA 1110 Query 1031 AAGAACCTATAAGGTCAAAGAATGAGCTCAAGGAGCTTCCTCCAGTTCCAGCTGTGGATG 1090 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1111 AAGAACCTATCAGGTCAAAGAATGAGCTCAAGGAGCTTCCTCCAGTTCCTCCTGTGGATG 1170 Query 1091 TCACTCTGGAACCACATCATGCCACACTTCCTGTTGGAGTTGTTCTTTCGGTAATGAGCA 1150 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1171 TCACTCTGGAACCACACCATGCCACACTTCCTGTTGGAGTTGTTCTTTCGGTAATGAGCG 1230 Query 1151 AACAAGTAATAGTTGAGGGAATGGAAAAGCATAGTCCTTTGACTGAAGGTTCTATCCTTT 1210 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1231 CACAAGTAATAGTTGAGGGAATGGAAAAGCATAGTCCTTTGACTGAAGGTTCTATCCTTT 1290 Query 1211 GGGTAACTGAAAAAAGAACGCCATTGGGACTGGTGGATGAGATCTTTGGACCAGTAAAGT 1270 || ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1291 GGATAACTGAAAAAAGAACGCCATTGGGACTGGTGGATGAGATCTTTGGACCCGTGAAGT 1350 Query 1271 GCCCTT-TCTATATTGTGAGGTTCAATTCAGAGAGTGAAGTGCCAGAAGGGGTTAGTCAA 1329 |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1351 GCCCTTAT-TATATTGTGAGGTTCAATTCAGAGAGTGAAGTGCCAGAAGGGGTTTGTCAA 1409 Query 1330 GGGACACCTGTCTCATTTGTCGCCGATTTCGCTCAACATATTCTCAATATCAAGGAACTG 1389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1410 GGGACACCTGTCTCATTTGTCGCCGATTTCGCTCAACATATTCTCAATATCAAGGAACTG 1469 Query 1390 CAGAAGAAAGGTTACGATGCATCTGGTGATAACGACGAGGAGATACCAGACGAGCTAGAG 1449 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1470 CAGAAGAAAGGTTACGATGCATCTGGGGATAACGACGAGGAGATACCAGACGAGCTAGAG 1529 Query 1450 TTCTCAGATGATGAAAAAGAAGCCGAATACAGAAGAATGCAGAAGATGGAAAAGAGAGGA 1509 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1530 TTCTCAGATGATGAAAAAGAAGCCGAATACAGAAGAATGCAGAAGTTGGAAAAGAGAGGA 1589 Query 1510 ATGATGATTGACCAGAAAACGGGTAACACAAGGAACAAGAAGAAGAAAAACCGAGATCTC 1569 ||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| | Sbjct 1590 ATGATGAGTGACCAGAAAACCGGTAACACCAGGAACAAGAAGAAGAAAAACCGAGATCCC 1649 Query 1570 GGAAGGCCTACCAGCAGTTACTCAGGGGAATGGACAGA-GAACCAGGGATCTAGTTCCCT 1628 ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| || Sbjct 1650 GGAAGGCCTACAAGCAGTTACTCAGGGGAATGGAC-GAAGAACCAGGGATCTAGTTCTCT 1708 Query 1629 ATCCTCAAACCGTTCTGATCCTCAAATGGGTGGTCCGCTTTCAAATCTTGGTCCGCGTCC 1688 ||| |||||||||||||||||||||||||||||||||| | ||| || Sbjct 1709 ATCGTCAAACCGTTCTGATCCTCAAATGGGTGGTCCGC-----------G-TCC---TC- 1752 Query 1689 TCAAACGGACGGTTTTCCTCCAAACAATGCAGCATGGCGGCCCCAGAGTAATCAGCAGAA 1748 ||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct 1753 --AAATGGACGGTTTTCCTCCAAACAATGCAGCATGGAGACCCCAGAGTAATCAGCAGAA 1810 Query 1749 CCCATATCAGCTTCCTCCTATACCTAATCAGATGGGAATGCCCAATCTAGCCCCAATGCA 1808 ||||||||||||||||||||||||||||||||||||||||| | | | | | Sbjct 1811 CCCATATCAGCTTCCTCCTATACCTAATCAGATGGGAATGC--A-----G----A-T--A 1856 Query 1809 GATACCTTTCATGGCAATGCAAAATCAAAATCAAATGATGTTCCAACCGCAGTTCAATGG 1868 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1857 ----CCTTTCATGGCAATGCAAAATCAAAATCAAATGATGTTCCAACCGCAGTTCAATGG 1912 Query 1869 TGGCCAGATGCCAATGCCAGGTGGACCTGGAGGCTTAAACTTCTTTCCAGGACAGGCTTC 1928 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1913 TGGCCAGATGCCAATGCCAGGTGGACCGGGAGGCTTAAACTTCTTTCCAGGACAGGCTTC 1972 Query 1929 AGCGCCATGGCCTGCATTGGTTGGTCAGAATTGTTTCAACCAACCA-TTTGGGATGGGTC 1987 |||||||||||||||| |||| |||||||||||||||||||||| | ||||||||||||| Sbjct 1973 AGCGCCATGGCCTGCAATGGTAGGTCAGAATTGTTTCAACCAAC-AGTTTGGGATGGGTC 2031 Query 1988 GCGGTATTCAGCAGCAGCCATTACCAAATGAGCTGAGTTTTAATCTGTTTTCTCAAGGTC 2047 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2032 GTGGTATTCAGCAGCAGCCATTACCAAATGAGCTGAGTTTTAATATGTTTTCTCAAGGTC 2091 Query 2048 TTCAAATGCACCCGCCACAGTCCCAAATGCACCGGCCACAGTCTCAAATGAATCCACATT 2107 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2092 TTCAAATGCACCCACCACAGTCCCAAATGCACCGGCCACAGTCTCAAATGAATCCACAGT 2151 Query 2108 TCCAAATGCCACCACAGTTCCAAACCAACCCGCAATCTCCAATGAACCCGCAGTACCAAA 2167 |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| Sbjct 2152 TCCAAATGCCACCACAGTTCCAGCCCCACCAGCAATCTCCAATGAACCCGCAGTACCAAA 2211 Query 2168 TGATGCATCGACCACAGTCTCCAATGAACCCGCAGTTCCAAATGCAACCACAATCTGATG 2227 ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| Sbjct 2212 TGATGCACCGACCACAGTCTCCAGCGAACCCGCAGTTCCAAATGCAAGCACAATCTGATG 2271 Query 2228 TGCGACCACCACAGTCACAAATCCCGCAGTCCCCAACAAATCTGCAGTCCCCAATGGAAT 2287 ||||||||| ||||||||||||||||||||| |||| || ||||||||||||||||| Sbjct 2272 TGCGACCACTACAGTCACAAATCCCGCAGTCACCAAGTGATTTGCAGTCCCCAATGGAAC 2331 Query 2288 CACAGTCTCAAGGGTTTAGCAGCGGGCAGTCTTCTGAACGGGGAAGGGGCTTCCGTGGTC 2347 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2332 CACAATCTCAAGGGTTTAGCAGCGGGCAGTCTTCTGAACGGGGAAGGGGCTTCCATGGTC 2391 Query 2348 GTGGGAGGGGTAG-GGGTCGGGGTCGCTCCGGACGTGGGCGAGGTCGAGGCCGGCAACAG 2406 |||| || ||||| ||| |||||||||| |||||||||||||||| |||||||||||||| Sbjct 2392 GTGGTAGAGGTAGAGGG-CGGGGTCGCTTCGGACGTGGGCGAGGTAGAGGCCGGCAACAG 2450 Query 2407 TCTGGATGA 2415 ||||||||| Sbjct 2451 TCTGGATGA 2459 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 119929102005 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5