BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg311903
Length=2319
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08520.1 | Symbols: ALB1, ALB-1V, V157, PDE166, CHLD | ALBIN... 2095 0.0
> AT1G08520.1 | Symbols: ALB1, ALB-1V, V157, PDE166, CHLD | ALBINA
1 | chr1:2696412-2700959 FORWARD LENGTH=2549
Length=2549
Score = 2095 bits (1134), Expect = 0.0
Identities = 1255/1311 (96%), Gaps = 17/1311 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGACTCCGGTCGCGTCATCATCTCCAGTGTCAACGTGCAGGCTCTTTCGCTGC 60
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 127 ATGGCGATGACTCCGGTCGCGTCATCATCTCCAGTTTCAACCTGCAGACTCTTTCGCTGC 186
Query 61 AATCTCCTCTCC-GATCTCTTACCTAAGCCTCTGTTTCTCTCCCTCCCCAAACGAAACAG 119
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AATCTCCTC-CCTGATCTCTTACCTAAGCCTCTGTTTCTCTCCCTCCCCAAACGAAACAG 245
Query 120 AAGTGCGTCGTGCCGCTTCACTGTACGTGCCTCCGCGAATGCTACCGTCGAATCCCCAAA 179
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 246 AATTGCCTCGTGCCGCTTCACTGTACGTGCCTCCGCGAATGCTACCGTCGAATCCCCTAA 305
Query 180 CGGTGTCCCTGCCTCGACATCAG--A--G--AC-G-GA--G--ACCACCTCCTATGGCCG 227
||||||||||||||| ||||||| | | || | || | |||||||||||||||||
Sbjct 306 CGGTGTCCCTGCCTCCACATCAGATACGGATACGGAGACGGATACCACCTCCTATGGCCG 365
Query 228 ACAGTTTTTCCCTTTGGCCGCAGTTGTTGGCCAGGAAGGCATCAAAACTGCTCTTTTACT 287
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 366 ACAGTTTTTCCCTTTGGCCGCAGTTGTTGGCCAGGAAGGCATAAAAACTGCTCTTTTACT 425
Query 288 TGGTGCTGTTGATCGTGAAATCGGAGGGATTGCTATTTCAGGTCGTAGAGGCACTGCAAA 347
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 426 TGGCGCGGTTGATCGTGAAATCGGAGGGATTGCCATTTCAGGTCGTAGAGGCACTGCAAA 485
Query 348 AACAGTCATGGCACGAGGGCTCCATGAAATCCTCCCTCCTATAGAAGTTGTTGTAGGCTC 407
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 486 AACAGTCATGGCGCGAGGGCTTCATGAAATCCTCCCTCCTATTGAAGTTGTTGTAGGCTC 545
Query 408 AATATCAAATGCTGACCCGGCTTGCCCAGATGAGTGGGAAGACGACTTAGATGAGCGAAT 467
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 546 AATATCAAATGCTGACCCAGCTTGTCCAGATGAGTGGGAAGATGACTTAGATGAGCGCAT 605
Query 468 AGAGTACAATGCTGATAATACCATTAAGACTGAGATTGTCAAATCTCCTTTCATTCAGAT 527
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 AGAGTACAATGCTGACAATACCATTAAGACTGAGATTGTCAAATCTCCTTTCATTCAGAT 665
Query 528 TCCTCTTGGTGTCACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAA 587
||| || || || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TCCACTAGGAGTTACAGAAGACAGACTCATTGGGTCTGTTGATGTTGAGGAGTCTGTGAA 725
Query 588 AAGGGGGACAACTGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AAGGGGGACAACTGTTTTCCAACCTGGTCTTTTGGCTGAAGCCCATAGAGGAGTGTTGTA 785
Query 648 TGTTGATGAGATAAATCTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGAC 707
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TGTTGATGAAATAAATCTCTTAGATGAGGGAATTAGTAATTTGCTTCTCAATGTATTGAC 845
Query 708 GGACGGTGTTAATATAGTTGAAAGAGAAGGAATCAGTTTTAGGCACCCATGCAAACCACT 767
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 846 GGATGGTGTTAATATAGTTGAAAGAGAAGGAATCAGCTTTAGGCACCCGTGCAAACCACT 905
Query 768 TTTAATTGCAACCTATAACCCTGAAGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TTTAATTGCAACCTATAACCCTGAAGAAGGTGCTGTTCGAGAGCACTTGCTAGACCGTGT 965
Query 828 TGCCATTAATTTAAGTGCAGACCTTCCTATGAGTTTTGAAGATCGCGTCGCAGCAGTTGG 887
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 966 TGCCATTAATTTAAGTGCAGACCTACCTATGAGTTTTGAAGATCGTGTCGCAGCAGTTGG 1025
Query 888 AATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAAAATGGTAAATGAAGAGAC 947
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1026 AATTGCCACACAGTTTCAGGAACGCTGTAATGAGGTTTTTAGAATGGTAAATGAAGAGAC 1085
Query 948 AGAGACAGCAAAGACGCAGATCATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAG 1007
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AGAAACAGCAAAGACGCAGATTATATTGGCTAGAGAATATTTGAAAGATGTCAAGATAAG 1145
Query 1008 TAGAGAGCAATTGAAGTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTTCAGGGACACCG 1067
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1146 TAGAGAGCAATTGAAGTATCTGGTTTTGGAAGCTGTCCGAGGTGGTGTCCAGGGACACCG 1205
Query 1068 CGCCGAATTGTATGCAGCTCGTGTGGCAAAGTGCTTAGCTGCAATTGAAGGAAGAGAAAA 1127
||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 1206 CGCCGAATTGTATGCAGCTCGTGTGGCGAAGTGTTTAGCTGCAATTGAAGGACGAGAAAA 1265
Query 1128 AGTCACAATTGATGACCTCAGAAAGGCCGTTGAGCTGGTCATTCTTCCGCGTTCATCACT 1187
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1266 AGTCACAATCGATGACCTCAGAAAGGCCGTTGAGCTGGTCATTCTTCCTCGTTCATCACT 1325
Query 1188 AGATGAGActcctccacctgaacaacaaaaccaaccaccacctccaccacctcctccaca 1247
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1326 AGATGAGACTCC---ACCTGAACAACAAAACCAACCACCACCTCCTCCACCTCCTCCACA 1382
Query 1248 aaaTAGCGAATCTGGagaagaagaaaatgaagaagaacaagaagaagaaga 1298
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 AAATAGCGAATCTGGAGAAGAAGAAAATGAAGAAGAACAAGAAGAAGAAGA 1433
Score = 1683 bits (911), Expect = 0.0
Identities = 953/974 (98%), Gaps = 0/974 (0%)
Strand=Plus/Plus
Query 1346 AGGATGAAAGCAATGAAGAAAATGAAAATGAGCAGCAACAAGACCAAATACCTGACGAGT 1405
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1436 AGGATGAAAGCAATGAAGAAAATGAAAATGAGCAGCAACAGGACCAAATACCTGAAGAGT 1495
Query 1406 TTATATTTGACGCTGAGGGTGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAG 1465
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTATATTTGACGCTGAGGGCGGTCTGGTGGATGAGAAACTCCTCTTCTTTGCTCAACAAG 1555
Query 1466 CCCAGAAACGTCGGGGGAAAGCTGGCAGAGCGAAGAATGTCATATTCTCAGAAGATAGAG 1525
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1556 CCCAGAAACGTCGGGGGAAAGCTGGCAGGGCGAAGAATGTCATATTCTCAGAAGATAGAG 1615
Query 1526 GACGCTATATAAAGCCAATGCTTCCAAAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAA 1585
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1616 GACGCTACATAAAGCCAATGCTTCCAAAGGGTCCAGTAAAAAGATTAGCTGTGGATGCAA 1675
Query 1586 CCCTTAGAGCGGCTGCACCATACCAGAAATTGCGCAGAGAGAAGGATATTTCAGGAACTA 1645
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1676 CCCTTAGAGCAGCTGCACCATACCAGAAATTGCGCAGAGAGAAGGATATCTCAGGAACTA 1735
Query 1646 GGAAAGTCTTTGTTGAGAAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAG 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 GGAAAGTCTTTGTTGAGAAGACAGATATGAGGGCCAAAAGAATGGCAAGGAAAGCTGGAG 1795
Query 1706 CCCTGGTTATCTTTGTGGTTGATGCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACG 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1796 CCCTGGTTATCTTTGTGGTTGATGCAAGTGGCAGTATGGCATTGAATCGTATGCAAAACG 1855
Query 1766 CCAAAGGTGCTGCACTCAAACTACTGGCAGAGAGCTATACTAGCAGGGATCAGGTTTCGA 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 CCAAAGGTGCTGCACTCAAACTACTGGCAGAGAGCTATACTAGCAGGGATCAGGTTTCGA 1915
Query 1826 TTATTCCTTTCCGAGGAGATGCTGCGGAAGTGCTCTTGCCCCCTTCTAGATCAATTGCAA 1885
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1916 TTATTCCTTTCCGAGGGGATGCTGCGGAAGTGCTCTTGCCCCCTTCTAGATCAATAGCAA 1975
Query 1886 TGGCAAGGAATCGTCTTGAGAGACTTCCTTGTGGTGGTGGTTCTCCTCTTGCCCATGGTT 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TGGCAAGGAATCGTCTTGAGAGACTTCCTTGTGGTGGTGGTTCTCCTCTTGCCCATGGTT 2035
Query 1946 TAACAACGGCTGTAAGAGTTGGACTTAACGCAGAGAAGAGTGGTGATGTCGGGCGCATTA 2005
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2036 TAACAACGGCTGTAAGAGTAGGACTTAACGCAGAGAAGAGTGGTGATGTCGGGCGCATAA 2095
Query 2006 TGATTGTTGCAATAACCGATGGTCGAGCCAACATTACACTGAAAAGATCAACTGATCCGG 2065
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2096 TGATTGTTGCGATAACCGATGGTCGAGCCAACATTACACTGAAAAGATCAACTGATCCGG 2155
Query 2066 ACTCTATCGCCCCAGATGCTCCTAGACCCACGTCCAAAGAATTGAAGGATGAGATTCTGG 2125
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 AGTCTATTGCCCCAGATGCTCCTAGACCCACGTCCAAAGAATTGAAGGATGAGATTCTGG 2215
Query 2126 AAGTTGCTGGGAAGATATACAAGGCAGGGATGTCTCTTCTAGTGATTGATACTGAGAACA 2185
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2216 AAGTTGCTGGGAAGATATACAAGGCAGGGATGTCTCTTCTAGTGATTGATACCGAGAACA 2275
Query 2186 AGTTTGTTTCAACTGGTTTTGCAAAGGAGATCGCTAGAGTTGCTCAAGGAAAATACTATT 2245
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2276 AGTTTGTTTCAACTGGTTTTGCAAAGGAGATCGCAAGAGTTGCTCAAGGAAAATATTATT 2335
Query 2246 ACTTGCCAAATGCTTCGGACGCGGTCATCTCGGCCACCACGAGGGATGCACTATCTGATC 2305
||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||
Sbjct 2336 ACTTGCCAAATGCTTCGGATGCTGTAATCTCGGCCACCACTAGGGATGCACTATCTGATC 2395
Query 2306 TGAAGAATTCTTGA 2319
||||||||||||||
Sbjct 2396 TGAAGAATTCTTGA 2409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115109849685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5