BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg311978 Length=1005 Score E Sequences producing significant alignments: (Bits) Value AT1G09350.1 | Symbols: AtGolS3, GolS3 | galactinol synthase 3 |... 1640 0.0 > AT1G09350.1 | Symbols: AtGolS3, GolS3 | galactinol synthase 3 | chr1:3019819-3021441 FORWARD LENGTH=1301 Length=1301 Score = 1640 bits (888), Expect = 0.0 Identities = 967/1006 (96%), Gaps = 2/1006 (0%) Strand=Plus/Plus Query 1 ATGGCACCTGAGATGAACAACAAGTTGAGCTACGGAGAAAAGAAGAGAGCGTACGTTACG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 70 ATGGCACCTGAGATGAACAACAAGTTGAGCTACGGAGAAAAGAAGAGAGCGTACGTTACG 129 Query 61 TTCCTAGCCGGGACCGGAGACTACGTGAAAGGAGTGGTTGGTCTGGCTAAAGGGCTAAGG 120 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 TTCCTCGCCGGAACCGGAGACTACGTGAAAGGAGTGGTTGGTCTGGCTAAAGGGCTAAGG 189 Query 121 AAAGCTAAAAGCAAGTACCCATTAGTGGTTGCTGTGTTACCTGACGTCCCGGTGGATCAC 180 ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 190 AAAACTAAAAGCAAGTACCCATTAGTGGTTGCTGTGTTACCTGACGTGCCGGCCGATCAC 249 Query 181 CGGAGACAGCTATTGGACCAAGGCTGCGTCATCAAGGAGATTCAGCCGGTTTACCCGCCG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 250 CGGAGACAGCTATTGGACCAAGGCTGCGTCATCAAGGAGATTCAGCCGGTTTACCCACCG 309 Query 241 GAGAACCAAACTCAGTTTGCCATGGCTTACTACGTCCTCAACTACTCCAAGCTTCGTATT 300 || ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| Sbjct 310 GATAACCAAACTCAGTTTGCTATGGCTTACTACGTCCTCAACTACTCTAAACTTCGTATT 369 Query 301 TGGAAGTTTGTAGAGTACAGCAAGCTGATATACTTAGACGGAGACATACAAGTGTTTGAG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 370 TGGAAGTTTGTAGAGTACAGCAAGCTGATATACTTAGACGGAGACATACAAGTGTTTGAG 429 Query 361 AACGTAGATCACTTGTTCGATCTTCCCGACGGCAATTTCTACGCCGTTAAAGATTGTTTC 420 ||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||| Sbjct 430 AACATAGATCACTTGTTTGATCTTCCTGACGGCAACTTCTACGCCGTTAAAGACTGTTTC 489 Query 421 TGCGAGAAGACATGGAGCCACACGCCTCAGTACAAGATCGGCTACTGCCAACAGTGTCCG 480 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 490 TGCGAGAAGACTTGGAGCCACACGCCTCAGTACAAGATTGGCTACTGCCAACAGTGTCCG 549 Query 481 GACAAGGTGACGTGGCCAGAGACAGAGCTTGGTCCTAAGCCACCGTTGTACTTCAACGCC 540 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 550 GACAAGGTGACGTGGCCTGAGTCAGAGCTTGGTCCTAAGCCACCGTTGTACTTCAACGCC 609 Query 541 GGCATGTTCGTCTACGAGCCAAGCCTCCCCACTTATTACAACCTTTTGGAGACTCTCAAA 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 610 GGCATGTTCGTCTACGAGCCAAGCCTCCCCACTTATTACAACCTTTTGGAGACACTCAAA 669 Query 601 GTTGTCCCTCCCACACCTTTTGCTGAACAGGATTTCTTGAACATGTACTTCAAAGACATA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 GTTGTCCCTCCCACACCTTTTGCTGAACAGGATTTCTTGAACATGTACTTCAAAGACATA 729 Query 661 TACAAGCCTATTCCACCAGTATACAATCTTGTCTTGGCCATGCTCTGGAGGCATCCAGAG 720 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 730 TACAAGCCTATTCCACCAGTTTACAATCTTGTCTTGGCCATGCTCTGGAGGCATCCAGAG 789 Query 721 AACATAGAGCTTGACGAAGCCAAGGTTGTTCATTACTGTGCAGCTGGTGCTAAGCCTTGG 780 |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 790 AACATAGAGCTTAACGAAGCTAAGGTTGTTCATTACTGTGCAGCCGGTGCTAAGCCTTGG 849 Query 781 AGGTTCACAGGCCAAGAAGAGAA-TATGGAGAGAGAAGACATCAAGATGCTTGTAGAGAA 839 ||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| Sbjct 850 AGGTTCACAGGCCAAGAAG-GAAATATGGAGAGGGAAGACATCAAGATGCTTGTAGAGAA 908 Query 840 ATGGTGGGACATTTATAACGACGAGTCACTTGACTACAATAACTTTAATGTGCATTGCGG 899 ||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 909 ATGGTGGGACATTTACAACGACGAGTCTCTTGACTACAAAAACTTTAATGTGCATTGCGG 968 Query 900 ACAAAAAGAAGATGTCCACAAGAAACAGCAAACACTTCCACAGTTCTTTACAGAATTGTC 959 ||||||||||||||| |||| ||||| | |||| |||||||||||||||||||| ||||| Sbjct 969 ACAAAAAGAAGATGTTCACAGGAAACCGAAAACCCTTCCACAGTTCTTTACAGATTTGTC 1028 Query 960 TGAAGCTGATGTGCTTCAATGCACCAAAGCTCCATCCGCGGCTTAG 1005 ||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1029 TGAAGCTGATGTGCTTCAATGTGCCAAAGCTCCATCCGCGGCTTAG 1074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49229464060 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5