BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312033

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G09920.1 | Symbols:  | TRAF-type zinc finger-related | chr1:...   418    3e-116


> AT1G09920.1 | Symbols:  | TRAF-type zinc finger-related | chr1:3224684-3227070 
REVERSE LENGTH=968
Length=968

 Score =  418 bits (226),  Expect = 3e-116
 Identities = 287/313 (92%), Gaps = 17/313 (5%)
 Strand=Plus/Minus

Query  1    ATGTATAAACCCTTCCTTAGAATCTGTCTGAAGGATTTGAGACAAATTTACAGAATTACA  60
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  866  ATGTATAAACCCTTCCTTAGAATCTGTCTGAAGGATTTGAGGCAAATTTACAGAATTACA  807

Query  61   CATAAGCTATG---CCTCTACTCAGGCTTCCTCTGGAAGAACAACGATCCTATGAAGACA  117
             |||||||| |   |||||||||||||||||||||||||||||| |||||||| |  |||
Sbjct  806  GATAAGCTACGCCTCCTCTACTCAGGCTTCCTCTGGAAGAACAAGGATCCTATTATCACA  747

Query  118  GCTATTCCCGTTATTGCTATCGTGAAGAAAAGCCTTTTGTGCGAAACACCGTTTCCATCT  177
            |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct  746  GCTATTCCCGTTATTGCTATCGTGAAGAAAAGCCTTTTGTTCGAAACACCGTTCCCATCT  687

Query  178  CTTCGTCTTCTCCCGTTTCCATCTCCTTCTGCTGCTCTCGGGATCCTTCT---TG---C-  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||   ||   | 
Sbjct  686  CTTCGTCTTCTCCCGTTTCCATCTCCTTCTGCTGCTCTCGGGATCCTTCTGGATGATTCA  627

Query  231  -CAG-G---G--CATTTGGTTTCATGGTTATATCTTTCTCTCAATCTAACATAGCTGTTG  283
             ||| |   |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  626  ACAGTGCCAGGGCATTTGGTTTCATGGTTATATCTTTCTCTCAATCTAACATAGCTGTTG  567

Query  284  CATTGATAACAGA  296
            |||||||||||||
Sbjct  566  CATTGATAACAGA  554


 Score =  243 bits (131),  Expect = 2e-63
 Identities = 137/140 (98%), Gaps = 0/140 (0%)
 Strand=Plus/Minus

Query  360  CCTGATGCTCAGCAAGATCAACCGCAGGCAATGGAAACTCACAGAACTCACATGTTACAA  419
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  529  CCTGATGCTCGGCAAGATCAACCGCAGGCAATGGAAACTCACAGAACTCGCATGTTACAA  470

Query  420  TCCTCTTGGGGCATATTTCTCCTTTATGACTATCGAAAATCTCACGTTCTATGGTCTCTT  479
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  469  TCCTCTTGGGGCAAATTTCTCCTTTATGACTATCGAAAATCTCACGTTCTATGGTCTCTT  410

Query  480  TGCACATCGAGCATGCTATC  499
            ||||||||||||||||||||
Sbjct  409  TGCACATCGAGCATGCTATC  390



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5