BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312033 Length=540 Score E Sequences producing significant alignments: (Bits) Value AT1G09920.1 | Symbols: | TRAF-type zinc finger-related | chr1:... 418 3e-116 > AT1G09920.1 | Symbols: | TRAF-type zinc finger-related | chr1:3224684-3227070 REVERSE LENGTH=968 Length=968 Score = 418 bits (226), Expect = 3e-116 Identities = 287/313 (92%), Gaps = 17/313 (5%) Strand=Plus/Minus Query 1 ATGTATAAACCCTTCCTTAGAATCTGTCTGAAGGATTTGAGACAAATTTACAGAATTACA 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 866 ATGTATAAACCCTTCCTTAGAATCTGTCTGAAGGATTTGAGGCAAATTTACAGAATTACA 807 Query 61 CATAAGCTATG---CCTCTACTCAGGCTTCCTCTGGAAGAACAACGATCCTATGAAGACA 117 |||||||| | |||||||||||||||||||||||||||||| |||||||| | ||| Sbjct 806 GATAAGCTACGCCTCCTCTACTCAGGCTTCCTCTGGAAGAACAAGGATCCTATTATCACA 747 Query 118 GCTATTCCCGTTATTGCTATCGTGAAGAAAAGCCTTTTGTGCGAAACACCGTTTCCATCT 177 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 746 GCTATTCCCGTTATTGCTATCGTGAAGAAAAGCCTTTTGTTCGAAACACCGTTCCCATCT 687 Query 178 CTTCGTCTTCTCCCGTTTCCATCTCCTTCTGCTGCTCTCGGGATCCTTCT---TG---C- 230 |||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 686 CTTCGTCTTCTCCCGTTTCCATCTCCTTCTGCTGCTCTCGGGATCCTTCTGGATGATTCA 627 Query 231 -CAG-G---G--CATTTGGTTTCATGGTTATATCTTTCTCTCAATCTAACATAGCTGTTG 283 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 626 ACAGTGCCAGGGCATTTGGTTTCATGGTTATATCTTTCTCTCAATCTAACATAGCTGTTG 567 Query 284 CATTGATAACAGA 296 ||||||||||||| Sbjct 566 CATTGATAACAGA 554 Score = 243 bits (131), Expect = 2e-63 Identities = 137/140 (98%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 360 CCTGATGCTCAGCAAGATCAACCGCAGGCAATGGAAACTCACAGAACTCACATGTTACAA 419 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 529 CCTGATGCTCGGCAAGATCAACCGCAGGCAATGGAAACTCACAGAACTCGCATGTTACAA 470 Query 420 TCCTCTTGGGGCATATTTCTCCTTTATGACTATCGAAAATCTCACGTTCTATGGTCTCTT 479 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 469 TCCTCTTGGGGCAAATTTCTCCTTTATGACTATCGAAAATCTCACGTTCTATGGTCTCTT 410 Query 480 TGCACATCGAGCATGCTATC 499 |||||||||||||||||||| Sbjct 409 TGCACATCGAGCATGCTATC 390 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25870585705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5