BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312432 Length=1296 Score E Sequences producing significant alignments: (Bits) Value AT1G14340.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1083 0.0 AT1G14345.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 878 0.0 > AT1G14340.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:4897346-4898961 FORWARD LENGTH=1039 Length=1039 Score = 1083 bits (586), Expect = 0.0 Identities = 671/713 (94%), Gaps = 2/713 (0%) Strand=Plus/Plus Query 1 ATGGATCATCAATATGGATATGGTGTTGAAGTTACTGGGTTATCTCCATCTGTTACTCAG 60 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 ATGGATCATCAATTTGGATATGGTGTTGAAGTTACTGGGTTATCTCCATCTGTTACTCAT 179 Query 61 AAAGATCTTATCGATTTCTTCTCTTTCTCTGGTGCAATCGAAGATATTGATATTGTCAGG 120 || |||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| Sbjct 180 AATGATCTTATCGATTTCTTCTCTTTCTCTGGTACTATCCAAGATATTGATATTGTCAGG 239 Query 121 TCGGGTGAGCAAGCTTGCACTGCTTATGTGATGTTCAAGGATTCTTATTCTCAAGAAACT 180 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 240 TCGGGTGAGCAAGCTTGTACTGCTTATGTGATGTTTAAGGATTCTTATTCTCAAGAAACT 299 Query 181 GCTGTTTTACTCAGTGGCGCAACCATATTGGATCAGCGTGTTTGTATAACTCGTTGGGGA 240 ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 300 GCTGTTTTACTCACTGGCGCAACGATATTGGATCAGCGTGTTTGTATAACTCGTTGGGGA 359 Query 241 CAGCATCACGAAGAGTTCGATTTCTGGAATGCGACTTCGCAAGGTTTTGAAGATGAATCT 300 || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 360 CAACATCACGAAGAGTTCGATTTCTGGAATGCGACTTCGCGAGGTTTTGAAGATGAATCG 419 Query 301 AACTCACATCCTTATGCTCAACGAGGCGAGTTCAACGCTGGGGAAGCAGTGACAAAAGCT 360 ||||||| | ||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 420 GACTCACAACATTATGCTCAACGAAGCGAGTTCAACGCTGGAGAAGCAGTGACAAAAGCT 479 Query 361 CAAGAAGTGGTGAAAACAATGCTTGCCACAGGTTTCGTGCTAGGCAAAGACGCTTTAAGC 420 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 480 CAAGAAGTGGTGAAAATAATGCTTGCCACAGGATTCGTGCTAGGCAAAGACGCTTTAAGC 539 Query 421 AAAGCTAAAGCCTTTGATGAATCTCACGGAGTATCAGCTGCGGCTGTAGCTAGAGTATCC 480 ||||||||||||||||||||||| ||||| ||||||||||| || || ||||||||||| Sbjct 540 AAAGCTAAAGCCTTTGATGAATCCCACGGCGTATCAGCTGCAGCGGTGGCTAGAGTATCT 599 Query 481 CAATTAGAGCAGAGGATTGGTCTCACTGACAAAATCTTTACCGGACTTGAAGCTGTCCGA 540 ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 600 CAACTAGAACAGAGGATTGGTCTTACTGACAAAATCTTTACCGGACTTGAAGCTGTTAGA 659 Query 541 ATGACTGACCAAAGGTACCATGTTTCAGACACGGCTAAATCAGCCGTCTTTGCTACAGGA 600 ||||||||||||||||| ||||||||||| || ||||||||||| |||||||| |||||| Sbjct 660 ATGACTGACCAAAGGTATCATGTTTCAGATACAGCTAAATCAGCTGTCTTTGCCACAGGA 719 Query 601 AGAACCGCAGCAGCAGCTGCAACTAGTGTTGTCAATAGCAGTTACTTCTCCAGCGGAGCT 660 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AGAACCGCGGCAGCAGCTGCAACTAGTGTTGTCAATAGCAGTTACTTCTCCAGCGGAGCT 779 Query 661 CTTTGGCTGTCCGGTGCGTTAGA-ACGAGCTGCTAAAGCTGCATCTGATCTCG 712 ||||||||||| ||||| ||||| | ||||||||||||| ||||||||||||| Sbjct 780 CTTTGGCTGTCTGGTGCATTAGAGA-GAGCTGCTAAAGCCGCATCTGATCTCG 831 > AT1G14345.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily protein | chr1:4899145-4899979 FORWARD LENGTH=835 Length=835 Score = 878 bits (475), Expect = 0.0 Identities = 548/584 (94%), Gaps = 2/584 (0%) Strand=Plus/Plus Query 714 TTCTTCCTCCCTTCCGCCGTCAACCGCCGCAACCTCCGTCGTTCGCAAATCCCTCCTCCT 773 ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 40 TTCTTCCTCAATTCCGCCGTCAACCGCCGTAACCTCCGTCGTTCGCAAATCTCTCCTCCT 99 Query 774 CTCAACAACCTTCTCCTTCCCCGCTTCTTCACTACCTCCTTCCACCAAATC-ACCACAAA 832 |||||| |||||||||||||||||||||||| | |||| ||||| ||| | |||||||| Sbjct 100 CTCAACCACCTTCTCCTTCCCCGCTTCTTCATTGTCTCCCTCCACGAAA-CTACCACAAA 158 Query 833 GACACATTCAAAGATTGCTCCTAGCTTCCTCATCCGCCTCAGCATCCACCGTTCCTTCCG 892 ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| Sbjct 159 GACACATTCAAAGATTGCTCCTAGCTTCCTCCTCCGCATCCGCATCCACCGTTCCTTCCG 218 Query 893 ATTCCAAACCGGCGAAAAAAGAAACAGTCTACTTCGACGGCGGAGCTCATTACGGAGATC 952 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 219 ATTCCAAACCGGCGAAGAAAGAAACAGTCTACTTCGACGGCGGAGCTCATTACGGAGATC 278 Query 953 TATTAGCCAATCTCATCCTAGGTCTAACCATCCTTTGGCTCCCACTAACCTTAGCCGCCG 1012 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 279 TATTAGCCAATCTCATTCTAGGTCTAACCATCCTTTGGCTCCCACTAACCTTAGCTGCAG 338 Query 1013 TATCCCGAGCCTTTAACCTCCGTTACAGGTTCACAAACCTCCGCGTGACGGTGATTTCGG 1072 | || ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||| Sbjct 339 TGTCTCGAGCTTTTAACCTTCGTTACAGGTTCACTAACCTCCGCGTGACGGTTATTTCGG 398 Query 1073 GACTCACCGGAGAAGACCGGAGCGACTTCTCGTACAAAGTGATTAAAGACGTTCAAGTTG 1132 ||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||| Sbjct 399 GACTCACCGGAGATGATCGGAGCGATTTCTCGTACAAAGTGATAAAAGACGTTCAAGTTG 458 Query 1133 TGCCGAGGTTCATCGGAGAATGGGGAGACATCATCATCACTTTGAAAGATGGGACAAAAG 1192 |||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||| Sbjct 459 TGCCGAGGTTCATCGGAGAATGGGGAGATATCATCATTACTTTGAAAGATGGAACTAAAG 518 Query 1193 TGGATTTGAGAAGTGTTCCTAAGTTCAGAGAGATTGCTAAATATTGTTTATCTATGGCTG 1252 |||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| Sbjct 519 TGGATTTGAGAAGTGTCCCTAAGTTCAGAGAGATTGCTAAGTACTGTTTATCTATGGCTG 578 Query 1253 ATCAACCTGCTGTTTTGAAAGAATCTGGTGCTAAAGGCTTTTGA 1296 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 579 ATCAACCTGCTGTTTTGAAAGAATCTGGTGCTAAAGGCTTTTGA 622 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63754692150 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5