BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg312568

Length=927
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G15800.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   507    1e-142


> AT1G15800.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G80610.1); 
Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5441082-5443684 
REVERSE LENGTH=1067
Length=1067

 Score =  507 bits (274),  Expect = 1e-142
 Identities = 324/346 (94%), Gaps = 11/346 (3%)
 Strand=Plus/Plus

Query  1    ATGACCGGCGGAGACTGGATTCACGAGGCTATGGGTGATGATTCATTGGTGGCGGAGGCT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  101  ATGACCGGCGGAGACTGGATTCACGAGGCTATGGGTGATGATTCATTAGTGGCGGAGGCT  160

Query  61   CTGATCTGTCTCCTCCATGCTGAACCGTCACCTCCTGAGACGAAGAGCGGCGGCGCGTCG  120
            |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||
Sbjct  161  CTGATCTGTCTCCTCCATGCCGAGCCGTCACTTCCTGAGACGAAGAGCGGCGGCGCGTCG  220

Query  121  GATCTCAAGCTGAAGTGGAGCGTGCGTCAGCGGAGGACCAAGGCGGC-ACCGTTAAGGAA  179
            ||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct  221  GATCTCAAGCTGAAGTGGAGCGTGCGTCAGCCGAGGACCAAGGCGGCGAC-GTTAAGGAA  279

Query  180  GAAGGGAGATCATGATACGCGTGCTAGTCCCACGACGCCTCTTTCCTGGAGCGGCGCAAC  239
            |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct  280  GAAGGGAGATCATGATACGCGTGCTAGTCCCACGACCCCACTTTCATGGAGCGGCGCAAC  339

Query  240  CTCTTTTAGCGGCGGTGGAGGCGGAGGTAGCGGTGCTGCTGTTGCCGTTGATGGATTTGA  299
            ||||||||||||||||||||||||   | ||  ||||||||   ||||||||||||||||
Sbjct  340  CTCTTTTAGCGGCGGTGGAGGCGG---T-GC--TGCTGCTG---CCGTTGATGGATTTGA  390

Query  300  GGAGTCAAGCGGCGCCGTGAAACTGTCTGAGGCCGTTAGATCTAAG  345
            ||||||||| ||||  ||||||||||||||||||||||||||||||
Sbjct  391  GGAGTCAAGTGGCGTTGTGAAACTGTCTGAGGCCGTTAGATCTAAG  436


 Score =  446 bits (241),  Expect = 2e-124
 Identities = 274/290 (94%), Gaps = 2/290 (1%)
 Strand=Plus/Plus

Query  639  GATATCTCAAACGAGTGTAACAACAAGCCCTTTCAAGAGATCAAGAAAGAAAAAGACACT  698
            |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  436  GATAACTCAAACGAGTGTTACAACAAGCCCTTTCAAGAGATCAAGAAAGAAAAAGACACT  495

Query  699  TGCTCAACTTAAAGAGGAGGAGAGTTTGCTCTTAAATGAAAGGAAAAGCTTGAAAAATGA  758
            ||||||||||||||||||||||||| |||||||||| ||||||||  |||||| ||||||
Sbjct  496  TGCTCAACTTAAAGAGGAGGAGAGTGTGCTCTTAAAGGAAAGGAATGGCTTGAGAAATGA  555

Query  759  ACTCGCAACTATGCAAGATCTGGTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAA  818
            ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  556  ACTCGCAACTATGCAGGATCTGCTCAAGCAACAAAGAGCAAGAAACGAGTCTTTAAAGAA  615

Query  819  TA-TCCAGGCTGAATCACAAAAGAATGATGATTCTTCCTTCTTGCTCCCTGACCTTAACA  877
             | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct  616  -ACTCCAGGCTGAGTCACAAAAGAATGATGATTCCTCCTTCTTGCTCCCTGACCTTAATA  674

Query  878  TACCTCTGGATAACAACCCGAGCCCTGAAAGTCTCTATGGAACCAGCTGA  927
            || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  675  TAGCTCTGGATAACAACTCGAGCCCTGAAAGTCTCTATGGAACCAGCTGA  724



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45311200594


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5