BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg312884 Length=1944 Score E Sequences producing significant alignments: (Bits) Value AT1G19490.1 | Symbols: | Basic-leucine zipper (bZIP) transcrip... 2073 0.0 AT1G19510.1 | Symbols: ATRL5, RSM4, RL5 | RAD-like 5 | chr1:675... 355 8e-97 AT1G19500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 316 4e-85 > AT1G19490.1 | Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:6751673-6753999 REVERSE LENGTH=1736 Length=1736 Score = 2073 bits (1122), Expect = 0.0 Identities = 1321/1413 (93%), Gaps = 30/1413 (2%) Strand=Plus/Plus Query 559 TTGGAGCCTATATCATCGAGTTGTTG--C-TCG---TCTTCTTCGTCTGGGGAGGAGGGT 612 |||||||||||||||||||||||||| | ||| |||||||| |||||||||||| | Sbjct 47 TTGGAGCCTATATCATCGAGTTGTTGCTCGTCGTCTTCTTCTTCTTCTGGGGAGGAGAAT 106 Query 613 ACGGCGGCGGCGAATATGACGGAGATGGAGGCGGCAGAGGCATTGGCGGATTTAGCGCAG 672 || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 107 ACTGCGGCGGCGAACATGACGGAGATGGAGGCGGCAGAAGCATTGGCGGATTTAGCGCAG 166 Query 673 CTTGCGATAATGCGAGAGCAGGTTTTCGAATCCGCGGCGAGTTGGGGAAGTAAAGGAAAA 732 |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||| Sbjct 167 CTTGCGATAATGCGAGAGCAGGTTTTCGAATCTGCAGCGAGTTGGGGAAGTAAAGGGAAA 226 Query 733 CGAGTGAGGAAGCGAGTCAAGACTGAGTCTCCTCCGTCTGACTCGCTTTTGAAACCACCT 792 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 227 CGGGTGAGGAAGCGAGTCAAGACTGAGTCTCCTCCTTCTGACTCGCTTTTGAAACCACCT 286 Query 793 GACTCTGAAACGTTACCTACTCCGGATCTAGCTGAGGAACGATTAGTgaaagaag-a-a- 849 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 287 GACTCTGATACGTTACCTACTCCGGATCTAGCTGAGGAACGATTAGTGAAAGAAGAAGAG 346 Query 850 gaagaagaagaagTT----C---AAC----CAA-TAACTAAAGCTCCGGTTAAAACTGAA 897 ||||||||||||||| | ||| || |||||||||||||||||||| ||||| Sbjct 347 GAAGAAGAAGAAGTTGAACCAATAACTAAAGAACTAACTAAAGCTCCGGTTAAATCTGAA 406 Query 898 ATGAATGGTGAAACACCTAAACTAAATCTTGCTTCTACACT--T-AGGTGTAGTAGATCA 954 || ||||||||||||||||||| || ||||||||| || || | ||||||||||||||| Sbjct 407 ATCAATGGTGAAACACCTAAACCAATTCTTGCTTCGACTCTAATAAGGTGTAGTAGATCA 466 Query 955 AATGGCTGTGGCCGATCGAGGCATAATTTAAGTGAGGCTGAAAGAGAAGAACGTAGAATC 1014 ||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 467 AATGGTTGTGGCCGATCAAGACAGAATTTAAGTGAGGCTGAAAGAGAAGAACGTAGAATC 526 Query 1015 CGAAGAATTTTAGCTAACAGAGAATCTGCGAGGCAGACAATTCGACGAAGACAGGCAATG 1074 |||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 527 AGAAGGATATTAGCTAATAGAGAATCTGCGAGGCAGACAATTCGGCGAAGACAGGCAATG 586 Query 1075 TGCGAGGAGTTGAGTAAAAAAGCAGCTGATCTGACATATGAGAATGAGAATTTGAGGAGG 1134 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587 TGTGAGGAGTTGAGTAAAAAAGCAGCTGATCTGACATATGAGAATGAGAATTTGAGGAGG 646 Query 1135 GAAAAGGATTGGGCTTTGAAAGAGTTTCATTCTTTGGAGACGATTAACAAGCATTTAAAG 1194 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 647 GAAAAGGATTGGGCTTTGAAAGAGTTTCAGTCTTTGGAGACGATTAACAAGCATTTAAAG 706 Query 1195 GAACAGGTATCGAAGTCAGTAAAACCCGATACAAAAGAACCTGAAGAATCGACCAAA-CC 1253 |||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| || || Sbjct 707 GAACAGGTATTGAAGTCAGTAAAACCCGATACAAAAGAGCCTGAAGAATC-ACCCAAGCC 765 Query 1254 ATCACAAGTTGATATGTCTACATCATCTACTCCGTTTTACTTCTACAACCAGAATCCATA 1313 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 ATCACAAGTTGAGATGTCTACATCATCTACTCCGTTTTACTTCTACAACCAGAATCCATA 825 Query 1314 TCAGCTTTTCTACTGGCCTCATGTTACTCAATCATCAAATCCAACGATATCGCCACTTGA 1373 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 826 TCAGCTTTTCTGCTGGCCTCATGTTACTCAATCATCAAATCCAATGATATCGCCACTTGA 885 Query 1374 ATTCGCC-ACATCGGGAGGAGCTTCTGCTAAAAGTATGACCTCACAGGAGCATGAAAATC 1432 |||| || || |||||||||||||||||||||| ||| ||| | ||||||||||||||| Sbjct 886 ATTC-CCTACTTCGGGAGGAGCTTCTGCTAAAACTATTACCACGCAGGAGCATGAAAATG 944 Query 1433 CTGCAGATGATAATGGGCAAAAAACTCATTTTTACGTTGTACCTTGCCCTTGGTTTCTCC 1492 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 945 CTGCAGATGATAATGGGCAAAAAACTCACTTTTACGTTGTACCTTGCCCTTGGTTTCTCC 1004 Query 1493 CTCCTCCTGATCAGAGCAACAGTGTTCCCTTCGGGCTTCAAAATACACAAAGAGGTACTT 1552 ||||||||||||| ||||| ||||||| |||||||||||| |||||||||||||||||| Sbjct 1005 CTCCTCCTGATCACAGCAATGGTGTTCCTTTCGGGCTTCAAGATACACAAAGAGGTACTT 1064 Query 1553 TTTCAAACGGGCACCATATCGATGATTCTTCTGCAAGACCGATAGAGGTCACAGAAACTC 1612 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1065 TTTCAAACGGGCACCATATCGATGATTCTTCTGCAAGACCGATGGATGTCACAGAAACTC 1124 Query 1613 TGCGGTCCCATCTACCAACTAGAATCAAAGAAGAAGACTCTGGTTCACCCGAAACCAGAC 1672 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1125 CGCGGTCCCATCTACCAACTAGAATCAAAGAAGAGGACTCTGGTTCACCCGAAACCAGAC 1184 Query 1673 CTTTATATGATCTCAACGAATCTGCAACTGAAGTCCTCTCAGAAGGAGGAGATG-ATTTT 1731 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1185 CTTTATATGATCTCAACGAATCTGCTACTGAAGTCCTCTCAGAAGGAGGAGATGGATTT- 1243 Query 1732 CCTATAACGCAACAAGATTATAGTTTAAAGCATGAAGATGTTTCCGAGACAACTAATGGA 1791 ||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1244 CCTGTAACGCAGCAAGCTTATAGTTTAAAGCATGAAGATGTTTCTGAGACAACTAATGGA 1303 Query 1792 GTTACACTGATGCCGCCTGGTCATCATGTTTTGATTTCTCTACCGGGGAAAAAGCAAGGA 1851 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1304 GTTACACTGATGCCGCCTGGTCATCATGTTTTGATTTCTCTACCGGAGAAAAAGCATGGA 1363 Query 1852 TCTTTGGCTGCAGCGGAAGCGAGAAAGAGACGGAAAGAACTCACAAGGCTCAAGAACCTC 1911 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1364 TCGTTGGCTGCAGCGGAAGCTAGAAAGAGACGGAAAGAACTCACAAGGCTCAAGAACCTC 1423 Query 1912 CATGGCCGTCAATGTCGGATGCAAGTCGGATAA 1944 ||||||||||||||||||||||| ||||||||| Sbjct 1424 CATGGCCGTCAATGTCGGATGCAGGTCGGATAA 1456 > AT1G19510.1 | Symbols: ATRL5, RSM4, RL5 | RAD-like 5 | chr1:6756284-6757377 REVERSE LENGTH=589 Length=589 Score = 355 bits (192), Expect = 8e-97 Identities = 200/204 (98%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1 ATGGCCTCTAGTTCTATGAGCTCGAGCTCCTCTTGGACGTCTAAGCAAAACAAGATGTTC 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 88 ATGGCCTCTAGTTCTATGAGCTCGAGCTCTTCTTGGACGTCTAAGCAAAACAAGATGTTC 147 Query 61 GAGAGGGCTTTAGCCGTTTACGATAAAGACACTCCCGACCGTTGGCAAAACGTGGCTAAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 GAGAGGGCTTTAGCCGTTTACGATAAAGACACTCCCGACCGTTGGCAAAACGTGGCTAAA 207 Query 121 GCAGTCGGAAGTAAATCTGCAGAGGAAGTCAAACGTCACTACGACATCCTCGTTGAAGAT 180 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 208 GCAGTTGGAAGTAAATCTGCAGAGGAAGTTAAACGTCACTACGACATCCTCGTTGAAGAT 267 Query 181 CTCATGAACATCGAAAAAGACTTA 204 ||||||||||||||| |||||||| Sbjct 268 CTCATGAACATCGAACAAGACTTA 291 Score = 69.4 bits (37), Expect = 1e-10 Identities = 42/44 (95%), Gaps = 2/44 (5%) Strand=Plus/Plus Query 206 TTAATGAAGAATATGAGAATCCAGTGAAGTCTGTTACATTGATG 249 |||||||||||||||||||||||||||||| |||||||| |||| Sbjct 364 TTAATGAAGAATATGAGAATCCAGTGAAGT-TGTTACAT-GATG 405 > AT1G19500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35765.1); Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6754786-6755684 REVERSE LENGTH=557 Length=557 Score = 316 bits (171), Expect = 4e-85 Identities = 205/222 (92%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 334 ATGGCGAAAATATCCGTGGCCGTGCTGTTGTCGGTATTGCTAATTGTTTCGATAAATTCG 393 |||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||| ||| Sbjct 149 ATGGCGAAAATATCGGTGGCCGTGCTGTTGTCGGTAATGCTACTTGTCTCGATAAACTCG 208 Query 394 GTGGATATCTTGGCCGAGGAACAGCCGACGGTTGGGCAGAGGATAGACTCGGCCGTGACG 453 ||||||||||||||||||||| | || ||||||||||||||| ||||||| ||| ||||| Sbjct 209 GTGGATATCTTGGCCGAGGAAGAACCAACGGTTGGGCAGAGGGTAGACTCCGCCATGACG 268 Query 454 GGTGTCACCAATGCATTCAATGAACACGGCGGCCCACAAGCCGTTGACACCGTATCATCC 513 |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 269 AGTGTCACCGATGCATTCAATGAACACGGCGGCCCACAAGCCGTCGACACCGTATCATCC 328 Query 514 ACCGTCAAATCCGTTTACGGATGGTTCAGTGAAAAAGCCAAG 555 ||| ||||||||||||||||||||||| |||| ||||||||| Sbjct 329 ACCTTCAAATCCGTTTACGGATGGTTCGGTGATAAAGCCAAG 370 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96284645310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5