BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313033
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21400.1 | Symbols: | Thiamin diphosphate-binding fold (THD... 2172 0.0
AT5G34780.1 | Symbols: | Thiamin diphosphate-binding fold (THD... 1007 0.0
> AT1G21400.1 | Symbols: | Thiamin diphosphate-binding fold (THDP-binding)
superfamily protein | chr1:7493426-7496710 FORWARD
LENGTH=1955
Length=1955
Score = 2172 bits (1176), Expect = 0.0
Identities = 1342/1423 (94%), Gaps = 8/1423 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATCTGGTTTGCTAGATCCAAAAACCTTGTTTCTAGCTTGAGACATAATCTGAAT 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 67 ATGGCGATCTGGTTTGCTAGATCCAAAACCCTTGTTTCTAGCTTGAGACATAATCTAAAT 126
Query 61 TTGTCGGCGATTCTCA-ACAAATGCGATTACTTTCCTCGTCCGATCTTCTTTTCAACAAC 119
|||||| | ||||||| | ||| | ||||||| || |||||| |||||| | | |||||
Sbjct 127 TTGTCGACAATTCTCATA-AAACGTGATTACTCTCATCGTCCCATCTTC-TAT--ACAAC 182
Query 120 TTCTCAGTTATCTTCCACGTCGTTTTTGAGTCCCGTCGCTAGCCTCCGTCATGAGTCTAC 179
||||||||||||||| ||| ||| |||||||||| ||| |||||||||||||||||||||
Sbjct 183 TTCTCAGTTATCTTCAACGGCGTATTTGAGTCCCTTCGGTAGCCTCCGTCATGAGTCTAC 242
Query 180 GGCTGTGGAGACACAGCCTGATCATTTGGTT---CAGATTGATGAAGACGATGGTCAGGA 236
||| |||||||||||| |||||||||||||| ||||||||||||| ||||| |||||
Sbjct 243 GGCCGTGGAGACACAGGCTGATCATTTGGTTCAGCAGATTGATGAAGTCGATGCCCAGGA 302
Query 237 ATTGGATTTTCCGGGAGGCAAAGTCGGTTACACATCTGAAATGAAATTCATACCGGAATC 296
| ||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 303 ACTGGATTTCCCAGGAGGCAAAGTCGGTTACACATCGGAGATGAAATTCATACCGGAATC 362
Query 297 ATCTTCTCGGAGAATTCCGTGTTACCGGGTTCTTGACGAAGACGGACGAATTATCCCCGA 356
|||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 363 ATCTTCAAGGAGGATTCCATGTTACCGGGTTCTTGACGAAGACGGACGAATCATCCCCGA 422
Query 357 TAGCGATTTTATACCGGTGAGTGAGAAACTCGCTGTTAGAATGTACGAACAAATGGCGAC 416
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TAGCGATTTTATTCCGGTGAGTGAGAAACTCGCTGTTAGAATGTACGAACAAATGGCGAC 482
Query 417 GCTACAAGTAATGGATCACATCTTCTACGAAGCTCAACGTCAAGGAAGAATCTCGTTTTA 476
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 483 GCTACAAGTAATGGATCACATCTTCTACGAAGCTCAACGTCAAGGAAGAATATCTTTTTA 542
Query 477 TCTTACTTCCGTCGGAGAAGAAGCCATTAACATCGCTTCTGCAGCTGCTCTCAGTCCTGA 536
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 TCTTACTTCCGTCGGAGAAGAAGCCATTAACATCGCTTCAGCAGCTGCTCTCAGTCCTGA 602
Query 537 CGATGTCGTTTTACCTCAATACCGAGAGCCTGGAGTTCTTCTATGGCGTGGCTTCACGTT 596
||| |||||||||||||| |||||||| |||||||||||| | |||||||||||||||||
Sbjct 603 CGACGTCGTTTTACCTCAGTACCGAGAACCTGGAGTTCTTTTGTGGCGTGGCTTCACGTT 662
Query 597 GGAGGAGTTTGCTAATCAGTGTTTTGGGAATAAAGCTGATTATGGCAAAGGCAGACAAAT 656
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 663 GGAGGAGTTTGCTAATCAGTGTTTTGGGAACAAAGCTGATTATGGCAAAGGCAGACAAAT 722
Query 657 GCCGATTCATTACGGTTCCAATCGTCTCAATTACTTCACTATCTCCTCTCCAATTGCCAC 716
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 723 GCCAATTCATTACGGTTCCAATCGTCTTAATTACTTCACTATCTCCTCTCCAATTGCCAC 782
Query 717 GCAACTTCCTCAAGCTGCTGGAGTTGGTTATTCTCTGAAAATGGACAAGAAGAACGCTTG 776
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 783 GCAACTTCCTCAAGCTGCTGGAGTTGGTTATTCTTTGAAAATGGACAAGAAGAATGCTTG 842
Query 777 TGCAGTAACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTCCACGCCGGATTGAA 836
| | || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 843 TACTGTTACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTTCACGCCGGATTGAA 902
Query 837 TTTTGCGGCAGTAATGGAAGCTCCGGTCGTGTTTATCTGTCGGAACAACGGTTGGGCGAT 896
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 903 TTTTGCGGCCGTAATGGAAGCTCCGGTTGTGTTTATATGTCGGAACAACGGTTGGGCGAT 962
Query 897 TAGTACTCATATCTCAGAACAGTTCAGAAGTGATGGAATTGTTGTGAAAGGTCAAGCTTA 956
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 963 TAGTACTCATATCTCAGAACAGTTTAGAAGTGATGGAATAGTTGTGAAAGGTCAAGCTTA 1022
Query 957 TGGAATCCGAAGCATTCGTGTGGACGGTAATGATGCACTCGCGGTTTATACTGCGGTACG 1016
|| ||||||||||| |||||||||||||| |||||||| |||||||||| ||| |||||
Sbjct 1023 CGGTATCCGAAGCATCCGTGTGGACGGTAACGATGCACTTGCGGTTTATAGTGCTGTACG 1082
Query 1017 CTCGGCTCGAGAAATGGCTGTAACAGAACAAAGACCAGTTCTCATTGAGGCGATGACATA 1076
||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1083 CTCAGCTCGAGAAATGGCTGTAACAGAACAAAGACCTGTTCTCATTGAGATGATGACATA 1142
Query 1077 TAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGGCGGCGGATGAAAT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 TAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGGCGGCGGATGAAAT 1202
Query 1137 CCAGTACTGGAAAATGTCGAGAAACCCTGTGAATAGATTCCGGAAATGGGTCGAGGATAA 1196
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1203 CCAGTACTGGAAAATGTCGAGAAACCCTGTGAATAGATTTCGGAAATGGGTCGAAGATAA 1262
Query 1197 CGGATGGTGGAGTGAGGAAGATGAATCCAAGCTAAGATCTAAGGCAAGAAAACAGCTTCT 1256
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1263 CGGATGGTGGAGTGAGGAAGATGAATCCAAGCTAAGATCTAACGCAAGAAAACAGCTTCT 1322
Query 1257 GCAAGCGATTCAGGCGGCAGAGAAGTGGGAGAAACAACCATTGACAGAGTTGTTTAACGA 1316
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GCAAGCGATTCAGGCTGCGGAGAAGTGGGAGAAACAACCATTGACAGAGTTGTTTAACGA 1382
Query 1317 TGTATATGATGTTAAACCGAAGAATCTAGAAGAGCAAGAACTTGGTTTAAAGGAATTAGT 1376
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1383 TGTATATGATGTTAAACCGAAGAACCTAGAAGAGCAAGAACTTGGTTTGAAGGAATTAGT 1442
Query 1377 AGAGAAACAACCTCAAGATTATCCTCCTGGTTTTCATGTTTGA 1419
| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1443 AAAGAAACAACCTCAAGATTATCCTCCTGGCTTTCATGTTTGA 1485
> AT5G34780.1 | Symbols: | Thiamin diphosphate-binding fold (THDP-binding)
superfamily protein | chr5:12961682-12963892 REVERSE
LENGTH=1098
Length=1098
Score = 1007 bits (545), Expect = 0.0
Identities = 605/635 (95%), Gaps = 0/635 (0%)
Strand=Plus/Plus
Query 764 AGAAGAACGCTTGTGCAGTAACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTCC 823
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 74 AGAAGAATGCTTGTGCTGTTACATTCATCGGAGATGGTGGCACAAGCGAGGGAGATTTCC 133
Query 824 ACGCCGGATTGAATTTTGCGGCAGTAATGGAAGCTCCGGTCGTGTTTATCTGTCGGAACA 883
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 134 ACGCCGGATTGAATTTTGCGGCGGTAATGGAAGCTCCGGTTGTGTTTATATGTCGGAACA 193
Query 884 ACGGTTGGGCGATTAGTACTCATATCTCAGAACAGTTCAGAAGTGATGGAATTGTTGTGA 943
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 194 ACGGTTGGGCGATTAGTACTCATATCTCAGAACAGTTTAGAAGTGATGGAATTGTTGTGA 253
Query 944 AAGGTCAAGCTTATGGAATCCGAAGCATTCGTGTGGACGGTAATGATGCACTCGCGGTTT 1003
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 AAGGTCAAGCTTACGGAATCCGAAGCATTCGTGTGGACGGTAATGATGCACTCGCGGTTT 313
Query 1004 ATACTGCGGTACGCTCGGCTCGAGAAATGGCTGTAACAGAACAAAGACCAGTTCTCATTG 1063
||| ||||||| | || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 314 ATAGTGCGGTATGTTCAGCTCGAGAAATGGCTGTAACAGAACAAAGACCTGTTCTCATTG 373
Query 1064 AGGCGATGACATATAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGG 1123
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 AGATGATGATATATAGAGTAGGACATCATTCTACATCAGATGATTCAACTAAGTACAGGG 433
Query 1124 CGGCGGATGAAATCCAGTACTGGAAAATGTCGAGAAACCCTGTGAATAGATTCCGGAAAT 1183
||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 434 CGGCGGATGAAATTCAGTACTGGAAAATGTCGAGAAACTCTGTGAATAGATTCAGGAAAT 493
Query 1184 GGGTCGAGGATAACGGATGGTGGAGTGAGGAAGATGAATCCAAGCTAAGATCTAAGGCAA 1243
||| || |||||||||||||||||||||||||||||||| ||||||||||| || || |
Sbjct 494 CGGTGGAAGATAACGGATGGTGGAGTGAGGAAGATGAATCAAAGCTAAGATCAAACGCGA 553
Query 1244 GAAAACAGCTTCTGCAAGCGATTCAGGCGGCAGAGAAGTGGGAGAAACAACCATTGACAG 1303
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 554 GAAAACAGCTTCTGCAAGCGATTCAGGCTGCGGAGAAGTGGGAGAAACAACCATTGACAG 613
Query 1304 AGTTGTTTAACGATGTATATGATGTTAAACCGAAGAATCTAGAAGAGCAAGAACTTGGTT 1363
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 614 AGTTGTTTAACGATGTATATGATGTTAAACCGAAGAATCTAGAAGAGGAAGAACTTGGTT 673
Query 1364 TAAAGGAATTAGTAGAGAAACAACCTCAAGATTAT 1398
||||||||||| |||||||||||||||||||||||
Sbjct 674 TAAAGGAATTAATAGAGAAACAACCTCAAGATTAT 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5