BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313324
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26665.2 | Symbols: | Mediator complex, subunit Med10 | chr... 839 0.0
AT5G41910.1 | Symbols: MED10A | Mediator complex, subunit Med10... 472 4e-132
AT1G26660.2 | Symbols: | Prefoldin chaperone subunit family pr... 427 8e-119
> AT1G26665.2 | Symbols: | Mediator complex, subunit Med10 | chr1:9214174-9215552
FORWARD LENGTH=794
Length=794
Score = 839 bits (454), Expect = 0.0
Identities = 538/576 (93%), Gaps = 16/576 (3%)
Strand=Plus/Plus
Query 357 GGAAAACCTAATTCGTCCGGAGCATCTCTACCTCTCTCTCGCAAAACCCATCTCTG-T-T 414
|||||||||||||||||||||| ||||| ||||| ||||||| |||| |||||||| | |
Sbjct 31 GGAAAACCTAATTCGTCCGGAGAATCTCCACCTCACTCTCGCCAAACGCATCTCTGTTGT 90
Query 415 --CTTGTGATGGATCCAACACAGAACGCAAGTGCAGGGATTGGTGGGAGTGGAAGCAATG 472
|||||||||||||||||||||||| ||||||||||||||||| | || |||||||
Sbjct 91 AGCTTGTGATGGATCCAACACAGAACACAAGTGCAGGGATTGGT----G-GG-AGCAATG 144
Query 473 GTACGATTAGATATCAAACCAATGACGGGACTTCAAC--T----GTTGCTGATGATTCAA 526
|||| || ||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 145 GTACAATCAGATATCAAACCAATGATGGGACTTCAACTGTGACCGTTGCTGATGATTCAA 204
Query 527 AGGAGAATCTGAGCCAAGTCATAAACTCTATTGAGAAAACTTTGGGAGTCCTTCATCAGT 586
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 205 AGGAGAATCTTTCCCAAGTCATAAACTCTATTGAGAAAACTTTAGGAGTCCTTCATCAGT 264
Query 587 TACACCTTACCGTCACTTCTTTCACACCCGCGTCTCAGCTCCATCTCCTCCAGCGCCTTA 646
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 265 TACACCTTACCGTCACTTCTTTCACACCCGCGTCTCAACTCCATCTCCTCCAGCGCCTTA 324
Query 647 ACTCTCTTGTGATGGAGCTGGATAACATGACTAAGTTGTCTGAGAAATGCAACATTCAAG 706
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 325 ACTCTCTTGTGATGGAGCTAGATAACATGACTAAGTTGTCTGAGAAATGCAACATTCAAA 384
Query 707 TCCCCATGGAAGTTCTTAACTTGATTGATGATGGGAAGAACCCGGATGAGTTTACGAAAG 766
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TCCCCATGGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCGGATGAGTTTACGAAAG 444
Query 767 ATGTTCTTAATAGCTGCATAGCTAGAAATCAAGTTACAAAGGGCAAGACTGATGCTTTTA 826
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 445 ATGTTCTTAATAGCTGCATAGCTAGAAATCAAGTTACTAAGGGCAAGACTGATGCTTTTA 504
Query 827 AGGATTTGAGAAAACATATTTTGGAGGAGCTTGAACAGACTTTTCCTGATGAAGTCGATA 886
|||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||
Sbjct 505 AGGATTTGAGAAAACATATTCTGGAGGAGCTTGAACAGAATTTCCCTGATGAAGTCGATA 564
Query 887 TGTATAGAGAAATCCGTGCTAGTTCTGCCGCTGTAA 922
|||||||||||||||||||||||||||| |||||||
Sbjct 565 TGTATAGAGAAATCCGTGCTAGTTCTGCTGCTGTAA 600
> AT5G41910.1 | Symbols: MED10A | Mediator complex, subunit Med10
| chr5:16778055-16779274 REVERSE LENGTH=723
Length=723
Score = 472 bits (255), Expect = 4e-132
Identities = 357/407 (88%), Gaps = 4/407 (1%)
Strand=Plus/Plus
Query 520 GATTCAAAGGAGAATCTGAGCCAAGTCATAAACTCTATTGAGAAAACTTTGGGAGTCCTT 579
|||||||| ||||| |||| |||| | |||||||| | | |||||| ||| | | |||||
Sbjct 145 GATTCAAATGAGAAGCTGAACCAAATTATAAACTCGAATCAGAAAATTTTAGAACTCCTT 204
Query 580 CATCAGTTACACCTTACCGTCACTTCTTTCACACCCGCGTCTCAGCTCCATCTCCTCCAG 639
||||| ||| | || |||||| ||||||||||||| || |||||||| || ||||||||
Sbjct 205 CATCAATTAAAACTCACCGTCTCTTCTTTCACACCTGCTTCTCAGCTTCACCTCCTCCAA 264
Query 640 CGCCTTAACTCTCTTGTGATGGAGCTGGATAACATGACTAAGTTGTCTGAGAAATGCAAC 699
||||| || ||||||||||||||||| ||||| ||| ||||||||||||| |||||||||
Sbjct 265 CGCCTCAATTCTCTTGTGATGGAGCTTGATAATATGGCTAAGTTGTCTGATAAATGCAAC 324
Query 700 ATTCAAGTCCCCATGGAAGTTCTTAACTTGATTGATGATGGGAAGAACCCGGATGAGTTT 759
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 325 ATTCAAGTCCCCATTGAGGTTCTTAACTTGATTGATGATGGGAAGAACCCAGATGAGTTT 384
Query 760 ACGAAAGATGTTCTTAATA-G--CTGCATAGCTAGAAATCAAGTTACAAAGGGCAAGACT 816
|| |||||||||||||||| | |||||| |||| |||||||||||||||||| |||| |
Sbjct 385 ACAAAAGATGTTCTTAATAAGAACTGCATTGCTAAAAATCAAGTTACAAAGGGAAAGAGT 444
Query 817 GATGCTTTTAAGGATTTGAGAAAACATATTTTGGAGGAGCTTGAACAGACTTTTCCTGAT 876
||||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 445 GATGCTTTTAAGGGTTTGAGAAAACATCTCTTGGAGGAGCTTGAACAGGCTTTTCCTGAT 504
Query 877 GAAGTCGATATGTATAGAGAAATCCGTGCTAGTTCTGCCGCTGTAAG 923
||||||||| ||||||||| || |||||||||| ||| |||| |||
Sbjct 505 GAAGTCGATCGGTATAGAGACATACGTGCTAGTTATGCTGCTG-AAG 550
> AT1G26660.2 | Symbols: | Prefoldin chaperone subunit family
protein | chr1:9211764-9213875 FORWARD LENGTH=768
Length=768
Score = 427 bits (231), Expect = 8e-119
Identities = 260/274 (95%), Gaps = 1/274 (0%)
Strand=Plus/Plus
Query 85 GCTTCACGCTCTGACTTGCGGAAAAACCTAGAAACTCTGGAGAAAAATGCTGTGAATAGT 144
||||| | |||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 315 GCTTCTC-CTCTGACTTGCGGAAAAACCTAGAAACTCTGGAGAAGAATGGTGTAAATAGT 373
Query 145 CTCAAAACAATGGTCAACCTTGGTTCTGAAGTTTACATGCAAGCTGAAGTGCCAGATACT 204
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 374 CTCAAAACAAGGGTCAACCTTGGTTCAGAAGTTTACATGCAAGCTGAAGTGCCAGATACT 433
Query 205 CGGCACATATTCATGGATGTAGGCCTCGGATTTTATGTGGAGTTCACTCGGCAAGAAGCT 264
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 434 CGGCACATATTCATGGATGTAGGCCTCGGCTTTTATGTGGAGTTCACACGGCAAGAAGCT 493
Query 265 CTTGACTATATTGCACAAAAGGAGGAAAGAACTAAAAAACAATTAGAAGAGTATACTGGT 324
||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||
Sbjct 494 CTTGACTATATAGCACAAAGGGAGGAAAGAACTCAAAAACAACTAGAAGAGTATACTGGT 553
Query 325 GTCATTACGCAGATCAAAGGGCGCATCAAACTGG 358
|| |||||||||||||||||||||||||||||||
Sbjct 554 GTTATTACGCAGATCAAAGGGCGCATCAAACTGG 587
Score = 143 bits (77), Expect = 3e-33
Identities = 87/92 (95%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGGGACGTCAAAAGGACTTGCAGTTGTTGGAGGAGATTATTGATAAAGGTTTA 60
|||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct 125 ATGGAGGAGGGACGTCAAAAAGACTTGCAATTGTTGGAGGAGATTATCGACAAAGGTTTG 184
Query 61 AAACAGAAGCTTGTACATGCAACTGCTTCACG 92
||||||||||||||||||||||||||||||||
Sbjct 185 AAACAGAAGCTTGTACATGCAACTGCTTCACG 216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5