BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313748
Length=2469
Score E
Sequences producing significant alignments: (Bits) Value
AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A ... 2968 0.0
AT4G19130.1 | Symbols: | Replication factor-A protein 1-relate... 1142 0.0
> AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A
protein 1-related | chr5:18398990-18401644 FORWARD LENGTH=2562
Length=2562
Score = 2968 bits (1607), Expect = 0.0
Identities = 1917/2062 (93%), Gaps = 39/2062 (2%)
Strand=Plus/Plus
Query 426 TGGGAGATACGGTGTATCTGCTAATTCACCTCAGCCTCTGGTTGGTGGTCTTAACAGTTC 485
||| |||||| ||||||| ||||||||||||||||||| ||| || || || ||||||
Sbjct 522 TGGAAGATACTGTGTATCGGCTAATTCACCTCAGCCTCAAGTT-GT--TCATAGCAGTTC 578
Query 486 CGACGCTGGGAGATATGGTGTATCGGCTAGTTTGGCTCAGCCTCAAGTTGGTGGTC-TAA 544
||||||||| ||||||||||||||||||| || |||||| ||||||| || || |||
Sbjct 579 CGACGCTGGAAGATATGGTGTATCGGCTAATTCACCTCAGCGTCAAGTT-GT--TCATAA 635
Query 545 CAGTTCCGATGCTGGGAGATAT-----G------G-T--TCAAAGATATGGTACTGGTTC 590
|||| |||| |||||||||||| | | | |||||||||||||||||||||
Sbjct 636 CAGTCCCGACGCTGGGAGATATGGACAGCCTCAAGTTAGTCAAAGATATGGTACTGGTTC 695
Query 591 TGGTTATCCGGAAACATCACCTTCCACCAGACCGTATGTGAGTTCAAATGCAGGTTATGG 650
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 696 TGGTTATCCGGAAACATCACCTTCCACTAGACCGTATGTGAGCTCAAATGCAGGTTATGG 755
Query 651 AGGGTCTAGACAGGAGCAACCTCGGGCTCCTCCTACGACAACCACTTATTCCCGTCCAGT 710
||| ||||| ||||| ||||||||||||||| || | ||||| ||||||||||||| ||
Sbjct 756 AGGCTCTAGGCAGGACCAACCTCGGGCTCCTACTGCAACAACTGCTTATTCCCGTCCGGT 815
Query 711 TCAGTCAGCTTATCAGTCACAACAACCACCGATGTATGTTAATAGGGGACCTGTGGCTAG 770
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 816 TCAGTCAGCTTATCAGCCACAACAACCACCGATGTATGTTAACAGGGGACCTGTGGCTAG 875
Query 771 GAATGAAGCTCCTCCGAGGATAATTCCGATTGCTGCTCTTAATCCTTACCAGGGTCGGTG 830
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 876 GAACGAAGCTCCTCCGAGGATAAATCCGATTGCTGCTCTTAATCCTTACCAGGGTCGGTG 935
Query 831 GACCATCAAGGTCAGGGTCTCGAGTAAGGCAGAACTGAGACGGTTTAATAATCCGCGTGG 890
|||||||||||| |||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 936 GACCATCAAGGTTAGGGTCACGAGTAAGGCAGACCTGAGGCGGTTTAATAATCCGCGTGG 995
Query 891 GGAAGGGAAATTGTTCAGTTTTGATCTCCTTGATGCTGATGGTGGAGAAATACGGGTGAC 950
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 996 GGAAGGGAAGTTGTTCAGTTTTGATCTTCTTGATGCTGATGGTGGAGAAATACGGGTGAC 1055
Query 951 TTGTTTTAATGATGCGGTTGATCAATTCTTTGACCAGATTGTAGTTGGTAATGTTTATCT 1010
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1056 TTGTTTTAATGATGCGGTTGATCAATTCTTTGACAAGATTGTAGTTGGTAATGTTTATCT 1115
Query 1011 GATATCAAGGGGAAATTTGAAGCCTGCTCAGAAGAACTATAATCATCTTCCCAATGATTA 1070
||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1116 GATTTCAAGGGGAAATTTGAAGCCTGCTCAGAAGAACTTTAATCATCTTCCGAATGATTA 1175
Query 1071 TGAAATACATTTGGATTCTGCATCAACGATACAGCGC-TGTGAGGATGATGGTACCATTC 1129
||||||||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 1176 TGAAATACATTTGGACTCTGCATCAACGATACAGC-CTTGTGAAGATGATGGTACCATTC 1234
Query 1130 CACGCAATCAGTTCCATTTTCGTAACATAAGTGATATTGAAAACATGGAGAGCAACAGCA 1189
||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1235 CACGCTATCATTTCCATTTTCGTAACATAGGTGATATTGAAAACATGGAGAACAACAGCA 1294
Query 1190 TGACTGATCTAATTGGTATTGTTTCGTCCATCGGTACC-ACAGTACCAATTATGCGGAAA 1248
|||||| ||||||||||||||||||||||| || || |||||| ||||||||||||||
Sbjct 1295 CCACTGATGTAATTGGTATTGTTTCGTCCATCAGT-CCGACAGTAGCAATTATGCGGAAA 1353
Query 1249 AACGGAACTGAGGTAGATAAAAGGGCACTTCAGTTGAAGGATATGTCAGGCCGTAGTGTT 1308
||| |||||||||| | |||||| | |||||||||||||||||||||||||| ||||||
Sbjct 1354 AACTTAACTGAGGTACAGAAAAGGTCTCTTCAGTTGAAGGATATGTCAGGCCGAAGTGTT 1413
Query 1309 GAGGTAACCATGTGGGGTAATTTCTGCAGCGCAGAAGGACAGCAATTGCAAAATCTTTGT 1368
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 1414 GAGGTAACCATGTGGGGTAATTTCTGCAACGCAGAAGGACAGAAATTGCAAAATCTTTGT 1473
Query 1369 GATTCTGGGGTATTCCCGGTTCTTGCTTTGAAAGCGGGCAGGATCGGTGAATTCAACGGG 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 GATTCTGGGGTATTCCCGGTTCTTGCTTTGAAAGCGGGCAGGATCGGTGAATTCAACGGG 1533
Query 1429 AAGCAAGTGAGCACCATTGGATCAAGTCAATTCTTCGTAGAGCCAGATTTCCCTGAAGCC 1488
|||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1534 AAGCAAGTGAGCACAATTGGAGCAAGTCAATTCTTTATAGAGCCAGATTTCCCTGAAGCC 1593
Query 1489 AGAGAATTAAGGCAATGGTATGAGAGAGAAGGAAGGAATGCTCATTTTACCTCCATATCT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1594 AGAGAATTAAGGCAATGGTATGAGAGAGAAGGAAGGAATGCTCATTTTACCTCCATATCT 1653
Query 1549 AGAGAGTTTTCCGGTGTTGGCAGACAAGAGGTTCGCAAGGTAATTACTCAGATCAAGGAC 1608
||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct 1654 AGAGAGTTTTCCGGTGTTGGCAGACAAGAAGTTCGCAAGGTAATTGCACAGATCAAGGAC 1713
Query 1609 GAGAAGCTAGGGACCTCAGAGAAGCCGGACTGGATCACAGTCTGTGCCACCATTTCATTC 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 GAGAAGCTAGGGACCTCAGAGAAGCCGGACTGGATCACAGTCTGTGCCACCATTTCATTC 1773
Query 1669 ATGAAGGTTGAAAATTTCTGCTATACGGCTTGTCCTATCATGAATGGAGATCGTCCATGC 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 ATGAAGGTTGAAAATTTCTGCTATACGGCTTGTCCTATCATGAATGGAGATCGTCCATGC 1833
Query 1729 AGCAAAAAAGTCACAAATAACGGAGATGGGACATGGCGTTGTGAGAAGTGTGACAAATGC 1788
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 AGCAAAAAGGTCACAAATAACGGAGATGGGACATGGCGTTGTGAGAAGTGTGACAAATGC 1893
Query 1789 GTGGATGAATGTGACTACAGGTATATATTGCAGATCCAGTTACAGGACCATACAGGCCTA 1848
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1894 GTGGATGAATGTGACTACAGGTATATATTACAGATCCAGTTACAGGACCATACAGACCTA 1953
Query 1849 ACCTGGGCCACAGCATTCCAGGAAGCTGGTGAAGAGATAATGGGAATGTCTGCAAAAGAT 1908
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1954 ACCTGGGCAACTGCATTCCAAGAAGCTGGTGAAGAGATAATGGGAATGTCTGCAAAAGAT 2013
Query 1909 TTGTATTATGTGAAGTATGAAAATCAGGATGAGGAGAAATTTGAAGATATCATCCGCAGT 1968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2014 TTGTATTATGTGAAGTATGAAAATCAGGATGAGGAGAAATTTGAAGATATCATCCGCAGT 2073
Query 1969 GTCGCTTTTACCAAGTACATTTTTAAGCTGAAGATTAAAGAAGAAACTTATAGCGACGAG 2028
||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 2074 GTCGCTTTTACTAAGTACATTTTCAAGCTGAAGATTAAAGAAGAAACTTACAGCGATGAG 2133
Query 2029 CAACGGGTTAAAGCAACAGTTGTGAAAGCTGAAAAGCTGAACTATGT-TTCAAATACCAG 2087
|| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 2134 CAGCGGGTTAAAGCAACAGTTGTGAAAGCTGAAAAGCTGAATTAT-TCTTCAAATACCAG 2192
Query 2088 GTGCATGCTAGAGGCAATGGATAAACTCAAGGTAGGAGATGCAAATTCTCTGCCTATAAA 2147
|| ||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||
Sbjct 2193 GTTCATGCTAGAGGCAATAGATAAACTCAAGATAGGAGATGCAAATTCTCTCCCTATAAA 2252
Query 2148 GACACAGAGTTCCAACTACAGGTCTGATGCAGTTAATTCCGGTATTGGAACCTCAGGAAC 2207
| || |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2253 GGCAGAGAGTTCCAATTACAGGTCTGATGCATTTAATTCCGGTGTTGGAACCTCAGGAAC 2312
Query 2208 TAGAGACACTGCGTCAGTGGATGCACGAAGAGAATTCGGAGTACCTGCAGCAAACCAAGT 2267
||||||||| || ||||| |||||||| |||||||| ||| |||||||||||||||||||
Sbjct 2313 TAGAGACACCGCATCAGTCGATGCACGCAGAGAATTTGGATTACCTGCAGCAAACCAAGT 2372
Query 2268 GGGTCAATATGGAAATCAGTACAGTAGTGGTGCAAGGTCTCTTGGCGGTATTACTAGCTG 2327
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 2373 GGGTCAATATGGAAATCAGTACAGTAGTGATGCAAGGTCTCTTGGCGGTTTTACTAGCTG 2432
Query 2328 CAACGCATGTGGCAGCAACAGCCATGTTTCGGCAAACTGCCCAAGCCTTATGAGTGAGCC 2387
||||| ||| ||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2433 CAACGTGTGTCGCAGCAACAGCCATGTTTCTGCAAACTGCCCAACCCTTATGAGTGAGCC 2492
Query 2388 ACAAGGACAATACATGAATGGGACACCGGGAAGATACAATGCAGGAGGAGGTTTGCCAAG 2447
|||||||||||||||| ||| ||| || || |||||||||||| |||||||
Sbjct 2493 ACAAGGACAATACATGGGTGG--CAC----AA-AT-----GCAGGAGGAGGTATGCCAAG 2540
Query 2448 GCAAAATGTTGGCAGCTACTGA 2469
|||| |||| ||||||||||||
Sbjct 2541 GCAACATGTAGGCAGCTACTGA 2562
Score = 484 bits (262), Expect = 1e-135
Identities = 499/606 (82%), Gaps = 46/606 (8%)
Strand=Plus/Plus
Query 1 ATGGCGGTGAATTTGACGGCA-GGAGCGATAACGAAGATATTGAATGGAGAAGTGTCGAG 59
|||||||||| |||||||| | |||| | ||| |||||| ||||| ||||||||| ||||
Sbjct 1 ATGGCGGTGAGTTTGACGG-AGGGAGTGGTAATGAAGATGTTGAACGGAGAAGTGACGAG 59
Query 60 TGAGATAGATTTGATGCCAGTGCTACAAGTAACGGAATTGAAGATGATTCA-A--A-GC- 114
|||| |||| |||||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct 60 CGAGACAGATATGATGCCAGTGCTACAAGTAACGGAATTGAAGCTGATTCAGAGCAAGCT 119
Query 115 --A--A---TC-G-A-TATA--A---G-T-T---TTTGT-T-ATCAGATGGGATTCACTT 152
| | || | | | || | | | | ||| | | ||||||||||| | ||||
Sbjct 120 TCATCAAAATCAGGAATCTAGCAATCGATATAAGTTTTTATTATCAGATGGGACTGACTT 179
Query 153 G-CAAGCAGGAATGCTTAAGACTACATTGAACAGTTTAGTGATTCAAGGCAGTATTCAAT 211
| || |||||||||||||| ||| |||||||||||||||||| |||||| | ||||||||
Sbjct 180 GGCA-GCAGGAATGCTTAATACTTCATTGAACAGTTTAGTGAATCAAGGAACTATTCAAT 238
Query 212 TGGGTTCGATTGTTAGACTCACTCACTATGTCTGCAGTCTCATCCAGGGTCGAAGGATTG 271
|||||||| || | |||||||||||||| |||||| |||||||||| |||||||||||
Sbjct 239 TGGGTTCGGTTATAAGACTCACTCACTACATCTGCAATCTCATCCAGACTCGAAGGATTG 298
Query 272 TTATAATTATGCAATTGGAGGTTATTGTGGCGAAATGTGATATAATTGGAACTCCTAATG 331
|| | ||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
Sbjct 299 TTGTTATTATGCAATTGGAGGTTATTGTGGAGAAATGTAATATAATTGGAAATCCTAAAG 358
Query 332 AACCTGGGCA-A-CGCGGTGGA-CCGG--CG-GTTCCTGTTAACACACAAAGCAATGGTG 385
|||||||||| | | || | | || || | | ||||||||||||||||||||||
Sbjct 359 AACCTGGGCATAGCTCGATTAATCCACAACGTGGTGGAGTTAACACACAAAGCAATGGTG 418
Query 386 GTTTTGACCAGCAACAAGCTAGAAGGAGTGATGTCAATGGTGGGAGATACGGTGTATCTG 445
||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 419 GTTCTGAGCAGCAACAAGCTAGAAGGAGTGATGTGAATGGTGGGAGATACGGTGTATCGG 478
Query 446 CTAATTCACCTCAGCCTCTGGTTGGTGGTCTTAACAGTTCCGACGCTGGGAGATA-TGGT 504
||||||| ||||| |||| |||| | || |||||||||||||||||| ||||| || |
Sbjct 479 CTAATTCGCCTCAACCTCAAGTTG-T--TCATAACAGTTCCGACGCTGGAAGATACTG-T 534
Query 505 GTATCGGCTAGTTTGGCTCAGCCTCAAGTTGGTGGTC-TAACAGTTCCGATGCTGGGAGA 563
|||||||||| || ||||||||||||||| | || || ||||||||| ||||| |||
Sbjct 535 GTATCGGCTAATTCACCTCAGCCTCAAGTTG-T--TCATAGCAGTTCCGACGCTGGAAGA 591
Query 564 TATGGT 569
||||||
Sbjct 592 TATGGT 597
> AT4G19130.1 | Symbols: | Replication factor-A protein 1-related
| chr4:10466477-10469092 REVERSE LENGTH=2496
Length=2496
Score = 1142 bits (618), Expect = 0.0
Identities = 1284/1599 (80%), Gaps = 71/1599 (4%)
Strand=Plus/Plus
Query 735 ACCACCGATGTATGTTAATAGGGGACCTGTGGCTAGGAATGAAGCTCCTCCGAGGATAAT 794
|||||||||||||| || |||||||| ||||||||||||||||| ||||| | ||||||
Sbjct 627 ACCACCGATGTATGCAAACAGGGGACCAGTGGCTAGGAATGAAGCACCTCCTAAGATAAT 686
Query 795 TCCGA-TTGCTGCTCTTAATCCTTA-CCAGGGTCGGTGGACCATCAAGGTCAGGGTCTCG 852
||| | || |||||||| ||| || || ||| ||||||||||||||| ||| ||| ||
Sbjct 687 TCC-AGTTAATGCTCTTAGTCCATATTCA-GGTAGGTGGACCATCAAGGCCAGAGTCACG 744
Query 853 AGTAAGGCAGAAC-TGAGACGGTTTAATAATCCGCGTGGGGAAGGGAAATTGTTCAGTTT 911
| ||| |||| || | || | | | |||||| ||||||||||||||| |||||| ||
Sbjct 745 AATAAAGCAGCACTTAAG-CAATACAGTAATCCCCGTGGGGAAGGGAAAGTGTTCAACTT 803
Query 912 TGATCTCCTTGATGCTGATGGTGGAGAAATACGGGTGACTTGTTTTAATGATGCGGTTGA 971
|||||| |||||||||||||| ||||||||||| || ||||||||||| | || || |||
Sbjct 804 TGATCTTCTTGATGCTGATGGCGGAGAAATACGTGTTACTTGTTTTAACGCTGTGGCTGA 863
Query 972 TCAATTCTTTGACCAGATTGTAGTTGGTAATGTTTATCTGATATCAAGGGGAAATTTGAA 1031
|||||||| |||||||||||| ||||||||| ||||||| || || ||||||| ||||
Sbjct 864 TCAATTCTATGACCAGATTGTTGTTGGTAATCTTTATCTTATCTCGAGGGGAAGTTTGCG 923
Query 1032 GCCTGCTCAGAAGAACTATAATCATCTTCCCAATGATTATGAAATACAT-TTGGATTCTG 1090
|||||| || ||||||| ||||||||||| |||||||| || || ||| ||||| ||
Sbjct 924 GCCTGCACAAAAGAACTTTAATCATCTTCGAAATGATTACGAGAT-CATGCTGGATAATG 982
Query 1091 CATCAACGAT---ACAGCGCTGTGAGGATGATGGTACCATTCCACGCAATCAGTTCCATT 1147
||||||| || ||| ||| ||| || |||| | | ||||| ||| ||||||||||||
Sbjct 983 CATCAACTATAAAACAATGCTATGAAGAGGATGCTGCAATTCCGCGCCATCAGTTCCATT 1042
Query 1148 TTCGTAACATAAGTGATATTGAAAACATGGAGAGCAACAGCAT-GACTGATCTAATTGGT 1206
| |||| ||| | |||||||| | |||||||| ||| |||| | |||| ||||||||
Sbjct 1043 TCCGTACCATTGGGGATATTGAGAGCATGGAGAATAACTGCATCG-TTGATGTAATTGGT 1101
Query 1207 ATTGTTTCGTCCATCGGTACC-ACAGTACCAATTATGCGGAAAAACGGAACTG-AGGTAG 1264
||||| || || ||| || || || ||| |||| | | ||||||||||||||| | |
Sbjct 1102 ATTGTGTCATCTATCAGT-CCTACTGTAACAATAACGAGGAAAAACGGAACTGCA-ACAC 1159
Query 1265 ATAAAAGGGCACTTCAGTTGAAGGATATGTCAGGCCGTAGTGTTGAGGTAACCATGTGGG 1324
||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1160 CGAAAAGATCACTTCAGTTGAAGGATATGTCAGGCCGAAGTGTTGAGGTAACTATGTGGG 1219
Query 1325 GTAATTTCTGCAGCGCAGAAGGACAGCAAT--TGCAAAATCTTTGTGATTCTGGGGTATT 1382
|| | ||||||| ||||||||||| || |||||| ||||||||||||||| || ||
Sbjct 1220 GTGACTTCTGCAATGCAGAAGGACA--AAGGCTGCAAAGTCTTTGTGATTCTGGTGTGTT 1277
Query 1383 CCCGGTTCTTGCT-TTGAAAGCGGGCAGGATCGGTGAATTCAACGGGAAG-CAAGTGAGC 1440
|||||||||||| || || ||||||||||| ||||||| || || ||| || ||||||
Sbjct 1278 TCCGGTTCTTGCTGTT-AAGGCGGGCAGGATTAGTGAATTTAATGGAAAGACA-GTGAGC 1335
Query 1441 ACCATTGGATCAAGTCAATTCTTCGTAGAGCCAGATTTCCCTGAAGCCAGAGAAT-T-AA 1498
||||||||||||||||| | ||| | || |||||||| |||||| ||||| | ||
Sbjct 1336 ACCATTGGATCAAGTCAGCTGTTCATTGACCCAGATTTTGTTGAAGCT-GAGAAACTGAA 1394
Query 1499 GGCAA-TGGTATGAGAGAGAAGGAAGGAATGCTCATTT-TACCTCCATATCTAGAGAGTT 1556
| || |||| |||||||||||||| || || || || || |||| ||||| | |||||
Sbjct 1395 G--AACTGGTTTGAGAGAGAAGGAAAGAGTG-TCCCTTGTATCTCCTTATCTCGGGAGTT 1451
Query 1557 TTCCGGT-GTTGGCAGACAAGAGGTTCGCAAGGTAAT-TACTCAGATCAAGGACGAGAAG 1614
|||||| || |||| | ||| ||||| ||| ||| | |||| || || || |||||
Sbjct 1452 TTCCGGCAGT-GGCAAAGTAGATGTTCGTAAGACAATAT-CTCAAATTAAAGATGAGAAA 1509
Query 1615 CTAGGGACCTCAGAGAAGCCGGACTGGATCACAGTCTGTGCCACCATTTCATTCATGAAG 1674
||||| ||||| || || || ||||||||||||||| ||||||| |||| || | |||||
Sbjct 1510 CTAGGAACCTCCGAAAAACCAGACTGGATCACAGTCAGTGCCACAATTTTATACTTGAAG 1569
Query 1675 GTTGAAAATTTCTGCTATACGGCTTGTCCTATCATGAATGGAGATCGTCCATGCAGCAAA 1734
|||| || |||||||| || ||||||||||||||||| || ||||||||||||||||||
Sbjct 1570 TTTGATAACTTCTGCTACACAGCTTGTCCTATCATGAACGGTGATCGTCCATGCAGCAAA 1629
Query 1735 AAAGTCACAAATAACGGAGATGGGACATGGCGTTGTGAGAAGTGTGACAAATGCGTGGAT 1794
|| || ||| | || ||||||||||||||||| || || |||||||| ||| |||| |||
Sbjct 1630 AAGGTAACAGACAATGGAGATGGGACATGGCGGTGCGAAAAGTGTGATAAAAGCGTTGAT 1689
Query 1795 GAATGTGACTACAGGTATATATTGCAGATCCAGTTACAGGACCATACAGGCCTAACCTGG 1854
||||||||||||||||||||| ||||| | ||| ||||||||||||||| || || ||
Sbjct 1690 GAATGTGACTACAGGTATATACTGCAGCTTCAGATACAGGACCATACAGATCTTACTTGC 1749
Query 1855 GCCACAGCATTCCAGGAAGCTGGTGAAGAGATAATGGGAATGTCTGCAAAAGATTTGTAT 1914
| ||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1750 GTCACAGCATTCCAGGAGGCTGGTGAAGAGATAATGGGCATATCTGCTAAAGATTTGTAT 1809
Query 1915 TATGTGAAGTATGAAAATCA-GGATGAGGAGAAATTTGAAGATATCATCCGCA-GTGTCG 1972
||||||||| ||||| | || ||||||||| ||||| |||||||||||||| | | || |
Sbjct 1810 TATGTGAAGAATGAACA-CAAGGATGAGGAAAAATTCGAAGATATCATCCGTAAG-GTTG 1867
Query 1973 CTTTTACCAAGTACATTTTTAAGCTGAAGATTAAAGAAGAAAC-TTATAGCGACGAGCAA 2031
||||||||||||||| || ||||||||| | ||||||||||| || |||||||| ||
Sbjct 1868 CTTTTACCAAGTACAACTTCAAGCTGAAGGTAAAAGAAGAAACATTC-AGCGACGAACAG 1926
Query 2032 CGGGTTAAAGCAACAGTTGTGAAAGCTGAA-AAGCTGAACTATGTTT-CAAATACCAGGT 2089
|| || ||||||||||||||||||| || | ||||| |||||| | || ||||||||
Sbjct 1927 CGTGTGAAAGCAACAGTTGTGAAAG-TGGACAAGCTAAACTAT-TCAGCAGATACCAGGA 1984
Query 2090 GC-ATGCTAGAG-GCAATGGATAAACTCAAGGT--AGGAGATGCAAATTCTCTGCCTATA 2145
| ||| ||| | || ||||||||||||| || || ||||||||||||||| || ||
Sbjct 1985 -CTATGTTAG-GTGCTATGGATAAACTCA-GGACCAG-AGATGCAAATTCTCTTCCCATT 2040
Query 2146 AAGACACAGA-GT-TCCAACTACAG-GTCTGATGCAGTTAATTCCGGTATTGGAACCTCA 2202
|| | |||| | ||| | |||| | |||||| |||||| | ||||| |||| ||||
Sbjct 2041 AAC-C-CAGAAGGATCCGATTACAATG-CTGATGTGGTTAATACTGGTATAGGAAGCTCA 2097
Query 2203 GGAACTAGAGA-CACTGCGTCAGTGGATGCACGAAGAGAATTCGGAGTACCTGCAGCAAA 2261
||||| ||||| | || | || || | | |||| || ||||| ||| ||| |||
Sbjct 2098 GGAACCAGAGATCCCT-CATCGGTCCAA--A-GAAGGGATTTCGGTTTACATGC-GCAT- 2151
Query 2262 CCAAGT-GGGTCAATATGGAAATCAGTACAGTAGTGGTG 2299
| || | |||||||| ||| ||||| || ||| ||||||
Sbjct 2152 C-AA-TCGGGTCAATCTGGGAATCACTATAGTGGTGGTG 2188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122507674806
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5