BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg313816 Length=1848 Score E Sequences producing significant alignments: (Bits) Value AT1G32450.1 | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:... 2955 0.0 > AT1G32450.1 | Symbols: NRT1.5 | nitrate transporter 1.5 | chr1:11715150-11719970 REVERSE LENGTH=2195 Length=2195 Score = 2955 bits (1600), Expect = 0.0 Identities = 1767/1849 (96%), Gaps = 5/1849 (0%) Strand=Plus/Plus Query 1 ATGTCTTGCCTAGAGATTTATAACAAAGACACAATgaagaagaaagaagaagaagaagaa 60 |||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| Sbjct 164 ATGTCTTGCCTAGAGATTTATAACAAAGACACGATGAAGAAGAAAGAAG--G-AGAAGAA 220 Query 61 gaaACAAGAGATGGAACAGTGGATTACTATGGTCGTCCCTCTATTCGTTCTAACTCAGGC 120 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 221 GAAACAAGAGATGGGACAGTGGATTACTATGGTCGTCCCTCTATTCGTTCTAACTCAGGC 280 Query 121 CAATGGGTTGCTGGCATCGTCATTCTCCTGAACCAGGGGTTGGCGACACTAGCCTTCTTT 180 |||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| Sbjct 281 CAATGGGTTGCTGGCATCGTCATTCTTCTGAACCAGGGGCTGGCTACACTAGCCTTCTTT 340 Query 181 GGAGTTGGAGTGAATTTGGTGCTCTTCCTAACGCGCGTTTTGCAGCAGAATAACGCAGAC 240 |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 341 GGAGTTGGAGTGAACTTGGTGCTCTTCCTAACTCGCGTTTTGCAGCAGAACAACGCAGAC 400 Query 241 GCAGCGAACAACGTTAGCAAATGGACAGGGACTGTTTATATCTTCTCATTAGTTGGAGCG 300 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 401 GCAGCTAACAACGTTAGCAAATGGACAGGGACTGTTTATATCTTCTCATTGGTTGGAGCG 460 Query 301 TTTCTCAGCGATTCGTATTGGGGTCGTTACAAGACTTGTGCTATATTTCAAGTCATTTTT 360 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 461 TTTCTCAGCGATTCGTATTGGGGTCGTTACAAGACTTGTGCTATCTTCCAAGTCATTTTT 520 Query 361 GTCATTGGACTTTCATCGCTATCGCTATCATCGTACATGTTCTTGATTAGACCACGAGGT 420 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 521 GTCATTGGACTTTCATCGCTATCGCTATCATCATACATGTTCTTGATTAGACCAAGAGGT 580 Query 421 TGCGGGGATGAAGTCACTCCTTGTGGTTCGCATTCCATGATGGAGATCACAATGTTCTAC 480 || ||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 581 TGTGGGGACGAAGTCACGCCTTGTGGTTCACATTCCATGATGGAGATCACAATGTTCTAC 640 Query 481 TTTTCGATCTACTTGATCGCATTGGGATATGGCGGTTACCAACCAAACATTGCAACGCTT 540 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 641 TTCTCGATCTACTTGATCGCATTGGGATATGGCGGTTACCAACCAAACATTGCAACGCTT 700 Query 541 GGAGCGGATCAATTCGATGAGGAGCATCCTAAAGAAGGGTACTCAAAGATTGCGTTTTTC 600 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 701 GGAGCGGATCAGTTCGATGAGGAGCATCCTAAAGAAGGGTACTCGAAGATTGCGTTTTTC 760 Query 601 AGCTACTTCTACCTTGCTTTGAACCTCGGATCACTCTTTTCAAACACCATCTTGGGGTAT 660 |||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct 761 AGCTACTTTTACCTTGCTTTAAACCTCGGATCGCTCTTTTCGAACACCATCTTGGGGTAT 820 Query 661 TTTGAGGATGAGGGAATGTGGGCACTTGGGTTTTGGGCGTCCACTGGTTCTGCTATCATT 720 |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||| Sbjct 821 TTTGAGGATGAGGGAATGTGGGCACTCGGGTTTTGGGCATCCACTGGCTCTGCTATCATT 880 Query 721 GGTTTGATTCTTTTCCTCGTTGGAACACCGAGATACCGATATTTTATGCCCACCGGGAAT 780 || |||||||||||||| |||||||||||||||||||||||||| | |||||| |||||| Sbjct 881 GGGTTGATTCTTTTCCTTGTTGGAACACCGAGATACCGATATTTCAAGCCCACGGGGAAT 940 Query 781 CCTCTTTCGAGGTTTTGCCAAGTTTTGGTCGCTGCAACGAAGAAATCATCGGTGGAGGCG 840 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 941 CCTCTTTCGAGGTTTTGCCAAGTTTTGGTCGCTGCAACGAAGAAATCATCGGTGGAGGCA 1000 Query 841 CCATTAAGAGGGAGAGAGGAGATGTATGATGGAGACAGCCAAGGGAAAAATGTTTCAGAA 900 ||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| Sbjct 1001 CCATTAAGAGGGAGAGAGGAGATGTATGACGGAGACAGCGAAGGGAAAAATGCTTCAGTT 1060 Query 901 AATACAGGGAGAAGGATAGTGCATACCGATGAATTCAAATTCTTGGACAAAGCAGCGTAC 960 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1061 AACACAGGGAGAAGGATAGTGCATACCGATGAATTCAAGTTCTTGGACAAAGCAGCGTAC 1120 Query 961 ATCACAGCGAGAGATCTTGATGACAAGAAACAAGACGCAGTTAATCCGTGGAGGCTCTGT 1020 |||||||| |||||||| |||||||||||||||||| |||| || || |||||||||||| Sbjct 1121 ATCACAGCTAGAGATCTAGATGACAAGAAACAAGACTCAGTGAACCCATGGAGGCTCTGT 1180 Query 1021 CCGGTGACACAAGTCGAGGAAGTCAAGTGCATTCTTAGACTGATGCCAATTTGGCTCTGC 1080 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1181 CCAGTGACACAAGTCGAGGAAGTCAAGTGTATTCTTAGACTGATGCCAATTTGGCTCTGC 1240 Query 1081 ACTATAATCTACTCAGTCGTCTTCACCCAAATGGCCTCTCTATTTGTGGAGCAAGGCGCT 1140 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1241 ACTATAATCTACTCAGTCGTCTTCACTCAAATGGCCTCTCTCTTTGTGGAGCAAGGCGCT 1300 Query 1141 GCAATGAATACCTCTGTCTCGGATTTCAAAATCCCCCCTGCAAGTATGTCCAGCTTCGAC 1200 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 1301 GCAATGAATACCTCTGTCTCAGATTTCAAAATCCCCCCGGCAAGTATGTCCAGCTTCGAC 1360 Query 1201 ATCCTTAGTGTCGCTTTGTTCATATTCCTATACCGCAGAGTTCTCGAGCCAGTAGCCAAC 1260 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1361 ATCCTTAGCGTCGCTTTGTTCATATTCCTGTACCGCAGAGTTCTCGAGCCAGTAGCCAAC 1420 Query 1261 AGATTCAAGAAGAACGGATCAAAAGGAATCACCGAGCTTCACAGGATGGGAATCGGACTT 1320 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1421 AGATTCAAAAAGAATGGATCAAAAGGAATCACCGAGCTTCACAGGATGGGAATCGGACTT 1480 Query 1321 GTTATTGCTGTCATAGCTATGATTGCAGCCGGAATTGTGGAATGCTATAGGCTAAAGTAC 1380 || ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1481 GTGATTGCTGTCATAGCTATGATTGCAGCCGGGATTGTGGAATGCTATAGGCTTAAGTAT 1540 Query 1381 GCAGACAAAAGTTGCACTCACTGTGATGGCTCAAGCTCCTTAAGCATCTTCTGGCAGGCT 1440 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1541 GCAGACAAGAGTTGTACTCACTGTGATGGCTCAAGCTCCTTAAGCATCTTCTGGCAGGCT 1600 Query 1441 CCACAATACTCACTAATTGGGGCATCAGAAGTGTTCATGTACGTGGGTCAGCTTGAGTTC 1500 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1601 CCACAATACTCACTCATCGGGGCATCAGAAGTGTTCATGTACGTGGGTCAGCTTGAGTTC 1660 Query 1501 TTCAACGCGCAAACACCAGACGGACTAAAGAGCTTCGGGAGCGCTCTGTGTATGATGTCA 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1661 TTCAACGCGCAAACACCAGACGGACTAAAGAGCTTCGGGAGCGCTCTGTGTATGATGTCA 1720 Query 1561 ATGTCAATGGGAAACTTTGTGAGTAGCTTGTTGGTGACAATGGTGGTGAAGATCTCTACA 1620 ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| ||| Sbjct 1721 ATGTCAATGGGGAACTTTGTTAGTAGCTTGTTGGTAACAATGGTGGTGAAGATCTCAACA 1780 Query 1621 GAGGATCACATGCCTGGTTGGATTCCAAGGAACCTCAACAAAGGTCACTTAGACAGATTC 1680 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1781 GAGGATCACATGCCTGGTTGGATTCCAAGGAATCTCAACAAAGGTCACTTAGACAGATTC 1840 Query 1681 TATTTCCTCTTGGCTGCGTTGACCG-GCATTGACCTGGTGGTATATATTGCCTGTGCAAA 1739 ||||||||| ||||||||||||| | ||||||||||||||||||| ||||| |||||||| Sbjct 1841 TATTTCCTCCTGGCTGCGTTGAC-GAGCATTGACCTGGTGGTATACATTGCATGTGCAAA 1899 Query 1740 GTGGTACAAACCTATAAAACTAGAAGGAAAAGATGAGATGCAAGACATGAGTGATGATGA 1799 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1900 ATGGTACAAACCTATACAACTAGAAGGAAAAGATGAGATGCAAGACATGAGTGATGATGA 1959 Query 1800 CGATGACACCGAGAGCGAAGAGGAACGAGAGAAGGATTCTAAAGTCTAA 1848 | ||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1960 CTATGACACCGAGAGTGAAGAGGAACGAGAGAAGGATTCTAAAGTCTAA 2008 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 91465392990 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5