BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg313952
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34570.1 | Symbols: | Essential protein Yae1, N-terminal | ... 832 0.0
AT3G15750.1 | Symbols: | Essential protein Yae1, N-terminal | ... 684 0.0
AT1G34550.1 | Symbols: EMB2756 | Protein of unknown function (D... 137 1e-31
> AT1G34570.1 | Symbols: | Essential protein Yae1, N-terminal
| chr1:12654940-12656486 REVERSE LENGTH=1026
Length=1026
Score = 832 bits (450), Expect = 0.0
Identities = 573/631 (91%), Gaps = 14/631 (2%)
Strand=Plus/Plus
Query 1 ATGGAGCCGCCTGAAGATGTGAAGGATAATTTCGCCAAAGAGCTTTATGGAGAAAGTGTA 60
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 43 ATGGAGCCGCCTGAAGATGGGAAGGTTAATTTCGCCAAAGAGCTTTATGGAGAAAGTTTG 102
Query 61 CAGCTTTCGAAACATGGTAATAAAGATCATGTTCTTGAGAATTTAGATGATCCCTTTTAC 120
||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 103 CAGATTTCGAAACTTAGTAATAAAGATCATGGTCTTGAGAATTTAGATGATCCCTTTTAC 162
Query 121 GGAAGTTCAGATGAAGATTATAGTGAAACTCGCGTCTTGGACAATGAGAAT-AACTTGAG 179
||||||||||||||||||||||||||| ||||||| ||||||||||||||| | | |||
Sbjct 163 GGAAGTTCAGATGAAGATTATAGTGAAGCTCGCGTGTTGGACAATGAGAATGAGC-AGAG 221
Query 180 ACGTGTGAAATTTGAATCGGCTGGATACCGTGATGGGATTGTTGCCGGGAAAGAAGCTAT 239
|||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 222 ACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGTTGTCGGGAAAGAAGCTAT 281
Query 240 TGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCTGTTCTTGATGGTTACAAGTTTGG 299
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 282 TGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCTTGCTGGTTACAAGTTTGG 341
Query 300 TATTGTAAGAGGTGTTTCCAGTGCGCTTGCTTTCCTCCCTGATGAGCTTAGAGAAAAGCT 359
|||||| ||||||||||| |||||||| ||||||||||| | |||| |||||||||||||
Sbjct 342 TATTGTTAGAGGTGTTTCTAGTGCGCTGGCTTTCCTCCCGGTTGAGTTTAGAGAAAAGCT 401
Query 360 AATCGATGAACAAGAAACTAGAGAGAAGTTTCAGAAATTACACAGTTCTGTGCATGCTCT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 TATCGATGAACAAGAAACTAGAGAGAAGTTTCAGAAATTACACAGTTCTGTGCATGCTCT 461
Query 420 CTCAACTGAAGTAGCAATGAAACGGTTCTATGAAACTTTGACTAC-AAAGCAAGGGGAAA 478
|| || ||||| |||||||| | ||||||||||||||||||||| ||| |||||||||
Sbjct 462 TTCGACGGAAGTCGCAATGAAGCAGTTCTATGAAACTTTGACTACGAAA-CAAGGGGAAG 520
Query 479 AGAAGAGTGGAGAAGAAGGGTCTGACT-TTGGTTCTGTTTCCGGTTC--G----GGTGTT 531
|||||||||||||||||||| | |||| ||| ||||||||| ||||| | ||||||
Sbjct 521 AGAAGAGTGGAGAAGAAGGGCCCGACTCTTG-TTCTGTTTCAGGTTCTTGTTCAGGTGTT 579
Query 532 AATGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAGCTCTCTTCTTGAAAAATCT 591
|||| |||| ||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 580 AATGTCACAGCCGACTTAGGAAGCTATGTTACTGAGCTAAGTTCTCTTCTTGACAAATCT 639
Query 592 CCTAA-GATTGAAGTTAAATTGGACACATAG 621
|| || ||||||||| ||||| || ||||||
Sbjct 640 CC-AACGATTGAAGTGAAATTTGATACATAG 669
> AT3G15750.1 | Symbols: | Essential protein Yae1, N-terminal
| chr3:5335078-5336476 FORWARD LENGTH=903
Length=903
Score = 684 bits (370), Expect = 0.0
Identities = 479/529 (91%), Gaps = 17/529 (3%)
Strand=Plus/Plus
Query 106 GATGATCCCTTTTACGGAAGTTCAGAT---GAAGATTATAGTGAAACTCGCGTCTTGGAC 162
||||||||||||||||||||||||||| ||||| ||||||||| ||||||| |||| |
Sbjct 87 GATGATCCCTTTTACGGAAGTTCAGATGAAGAAGACTATAGTGAAGCTCGCGTGTTGGGC 146
Query 163 AATGAGAATAA-CTTGAGACGTGTGAAATTTGAATCGGCTGGATACCGTGATGGGATTGT 221
||||||||||| | ||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct 147 AATGAGAATAAGC-AGAGACGTGTGAAATTCCACTCGGCTGGATATCGTGATGGGATTGT 205
Query 222 TGCCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCTGTTCT 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 206 TGCCGGGAAAGAAGCTATTGCGCAGGAAGGTTATAACTTTGGCTATAAGGAATCAGTTCT 265
Query 282 TGATGGTTACAAGTTTGGTATTGTAAGAGGTGTTTCCAGTGCGCTTG-CTTTCCTCCCTG 340
| |||||||| |||||||| |||| |||||||||||||||||| ||| |||||||||| |
Sbjct 266 TAATGGTTACCAGTTTGGTCTTGTTAGAGGTGTTTCCAGTGCG-TTGGCTTTCCTCCCGG 324
Query 341 ATGAGCTTAGAGAAAAGCTAATCGATGAACAAGAAACTAGAGAGAAGTTTCAGAAATTAC 400
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 325 ATGAGCTTAGAGAAAAGCTTATCGATAAACAAGAAACTAGAGAGAAGTTTCAGAAATTAC 384
Query 401 ACAGTTCTGTGCATGCTCTCTCAACTGAAGTAGCAATGAAACGGTTCTATGAAACTTTGA 460
||||||||||||||||||| || || ||||| |||||||| |||||||||||||||||||
Sbjct 385 ACAGTTCTGTGCATGCTCTTTCGACGGAAGTCGCAATGAAGCGGTTCTATGAAACTTTGA 444
Query 461 CTACAAAGCAAGGGGAAAAGAAGAGTGGAGAAGAAGGGTCTGACT-TTGGTTCTGTTTCC 519
|||| |||||||||||| |||||||||||||||||||| | |||| ||| ||||| |||
Sbjct 445 CTACGAAGCAAGGGGAAGAGAAGAGTGGAGAAGAAGGGCCCGACTCTTG-TTCTGATTCA 503
Query 520 GGTTC-GG----G-TGTTAATGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAGC 573
||||| || | |||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 504 GGTTCTGGTTCAGGTGTTAATGTCACAACCGACTTAGGAAGCTATGTTACTGAGCTAAGT 563
Query 574 TCTCTTCTTGAAAAATCTCCTAA-GATTGAAGTTAAATTGGACACATAG 621
||||||||||| |||||||| || ||||||||||||||| |||||||||
Sbjct 564 TCTCTTCTTGACAAATCTCC-AACGATTGAAGTTAAATTTGACACATAG 611
Score = 124 bits (67), Expect = 8e-28
Identities = 73/76 (96%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCCGCCTGAAGATGTGAAGGATAATTTCGCCAAAGAGCTTTATGGAGAAAGTGTA 60
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 12 ATGGAGCCGCATGAAGATGTGAAGGATAATTTGGCCAAAGAGCTTTATGGAGAAAGTGTA 71
Query 61 CAGCTTTCGAAACATG 76
||||||||||| ||||
Sbjct 72 CAGCTTTCGAAGCATG 87
> AT1G34550.1 | Symbols: EMB2756 | Protein of unknown function
(DUF616) | chr1:12646696-12652646 REVERSE LENGTH=2600
Length=2600
Score = 137 bits (74), Expect = 1e-31
Identities = 84/89 (94%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 515 TTTCCGGTTCGGGTGTTAATGCCACAACCGACTTGGGAAGCTATGTTACTGAGCTAAGCT 574
|||| |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 164 TTTCTGGTTCGGGTGTTAATGCCACAAGTGACTGGGGTAGCTATGTTACTGAGCTAAGCT 223
Query 575 CTCTTCTTGAAAAATCTCCTAAGATTGAA 603
|||||||||||||||||||||||||||||
Sbjct 224 CTCTTCTTGAAAAATCTCCTAAGATTGAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5