BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314496 Length=1545 Score E Sequences producing significant alignments: (Bits) Value AT1G51340.2 | Symbols: | MATE efflux family protein | chr1:190... 2483 0.0 > AT1G51340.2 | Symbols: | MATE efflux family protein | chr1:19031997-19034979 FORWARD LENGTH=1870 Length=1870 Score = 2483 bits (1344), Expect = 0.0 Identities = 1481/1548 (96%), Gaps = 6/1548 (0%) Strand=Plus/Plus Query 1 ATGTCTGAAGATGGATACAACACAGATTTTCCAAGAAACCCTCTTA-AAATCTTCTTTAG 59 |||||||||||||| |||||||||||||||||||||||||||| || | || |||||||| Sbjct 28 ATGTCTGAAGATGGCTACAACACAGATTTTCCAAGAAACCCTC-TATACATTTTCTTTAG 86 Query 60 TGATTTCAGATCAGTTTTTAAACTTGATGAGCTCGGTTTAGAGATAGCTCGTATAGCTTT 119 |||||||||||||||| | ||| ||||||||||||||||||||||||| || || ||||| Sbjct 87 TGATTTCAGATCAGTTCTGAAATTTGATGAGCTCGGTTTAGAGATAGCGCGAATTGCTTT 146 Query 120 ACCTGCAGCACTTGCTTTAACAGCTGATCCTATTGCCTCTCTAGTTGACACAGCCTTCAT 179 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 147 ACCCGCAGCACTTGCTTTAACAGCTGATCCTATTGCATCTCTAGTTGACACAGCCTTCAT 206 Query 180 AGGCCAAATTGGCCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTGTTCAACCA 239 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 207 AGGCCAAATTGGTCCTGTAGAGCTTGCTGCAGTTGGAGTTTCTATTGCTTTATTCAACCA 266 Query 240 AGTTTCAAGAATCGCTATTTTCCCACTCGTGAGCATCACAACTTCCTTTGTAGCAGAGGA 299 |||||||||||| |||||||||||||| || |||||||||||||||||||||||||| || Sbjct 267 AGTTTCAAGAATTGCTATTTTCCCACTTGTTAGCATCACAACTTCCTTTGTAGCAGAAGA 326 Query 300 AGATGCTTGTAGTTCTCAGCAAGACACAGTCCAAGATCATAAAGAATGTATTGAAGCTGG 359 |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 327 AGATGCTTGTAGTTCTCAGCAAGACACAGTCCGAGATCATAAAGAATGTATTGAAATTGG 386 Query 360 TATCAACAATCCAACTGAGGAAACTCA-AGAATTGATTCCTG-AAAACAATAAAGATTCT 417 ||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| Sbjct 387 TATCAACAATCCAACTGAGGAAACT-ATAGAATTGATTCCTGAAAAAC-ATAAAGATTCT 444 Query 418 TTATCAGATGAATTTAAAACCGGTAGCAGTATCTTTAGTATTAGTAAACCTCCAGCCAAG 477 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 445 TTATCAGATGAATTTAAAACCAGTAGCAGTATCTTTAGTATTAGTAAACCTCCAGCCAAG 504 Query 478 AAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCTTTCTTGGCCTTTTC 537 ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 505 AAAAGAAACATACCATCAGCTTCATCTGCTTTAATCATTGGAGGCGTTCTCGGCCTTTTT 564 Query 538 CAAGCTGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTTAAACAC 597 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 565 CAAGCCGTGTTTCTTATATCCGCAGCCAAACCTCTCTTGAGTTTCATGGGAGTAAAACAC 624 Query 598 GATTCTCCAATGCTGAGACCTGCTCAGAGATATCTATCTCTGAGATCACTTGGTGCACCC 657 |||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||| Sbjct 625 GATTCTCCAATGATGAGACCTTCTCAGAGATATCTATCTTTAAGATCACTTGGTGCACCA 684 Query 658 GCTGTTTTACTCTCACTCGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACCACAACT 717 |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 685 GCTGTTCTACTCTCACTTGCGGCACAAGGCGTTTTCCGCGGATTTAAAGACACGACAACT 744 Query 718 CCGCTATTTGCTACTGTGATTGGAGATGTCACAAACATAATTCTCGACCCGATTTTCATA 777 ||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 745 CCGTTATTCGCTACTGTGATTGGAGATGTAACAAACATAATACTCGACCCGATTTTCATA 804 Query 778 TTCGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATACCTT 837 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 TTTGTTTTCCGCCTAGGCGTAACAGGAGCAGCCACTGCTCATGTTATATCCCAATACCTT 864 Query 838 ATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGTACC 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 865 ATGTGTGGAATACTCTTGTGGAAACTGATGGGTCAAGTTGATATCTTCAACATGAGTACC 924 Query 898 AAACATCTTCAGTTCTGTAGATTCATGAAAAATGGCTTTCTTTTGCTAATGAGAGTAATC 957 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 925 AAACATCTTCAGTTCTGTAGATTCATGAAAAATGGCTTTCTTTTGCTGATGAGAGTAATT 984 Query 958 GCGGTGACATTCTGTGTAACTCTTTCCGCGTCACTAGCTGCACGAGAAGGATCAACTTCC 1017 || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 985 GCAGTAACATTCTGTGTAACTCTCTCCGCGTCACTAGCTGCACGAGAAGGATCAACTTCC 1044 Query 1018 ATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGG 1077 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1045 ATGGCAGCTTTCCAAGTTTGCTTGCAGGTTTGGTTAGCTACTTCACTTCTTGCAGACGGG 1104 Query 1078 TTCGCTGTAGCTGGCCAGGCAATACTAGCGAGCGCGTTTGCGAAAAAGGACTACAAAAGA 1137 | ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1105 TACGCCGTAGCTGGCCAGGCAATACTAGCGAGCGCGTTTGCCAAAAAAGACTACAAAAGA 1164 Query 1138 GCTTCAGCTACTGCTTCTCGTGTCCTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCG 1197 || ||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1165 GCAGCAGCTACCGCCTCTCGTGTACTGCAGTTGGGATTGGTTCTCGGTTTTGTACTTGCG 1224 Query 1198 GTTATACTTGGAGCAGGATTGCACTTTGGAGCAAGAGTATTTACGAAAGACGATAAAGTT 1257 ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| Sbjct 1225 GTTATACTTGGAGCAGGATTGCATTTTGGAGCAAGAGTGTTTACAAAAGACGATAAAGTT 1284 Query 1258 TTACACCTAATTAGCATAGGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTA 1317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1285 TTACACCTAATTAGCATAGGACTTCCGTTTGTGGCAGGGACACAACCAATTAATGCCTTA 1344 Query 1318 GCGTTTGTGTTCGATGGAGTTAACTTTGGAGCATCCGATTTCGGTTATGCCGCAGCTTCA 1377 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1345 GCGTTTGTGTTCGATGGAGTTAACTTTGGAGCATCCGATTTCGGTTACGCCGCAGCTTCA 1404 Query 1378 TTAGTAATGGTGGCTATAGTTAGCATCTTGTGTTTACTCTTTCTCTCATCGACTCATGGG 1437 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 1405 TTAGTAATGGTGGCTATAGTTAGCATCTTGTGTTTGCTCTTCCTCTCATCGACTCATGGT 1464 Query 1438 TTTATTGGACTTTGGTTTGGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTC 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1465 TTTATTGGACTTTGGTTTGGTCTCACCATTTACATGAGTCTTAGAGCAGCCGTTGGATTC 1524 Query 1498 TGGCGGATTGGGACAGGAACAGGACCTTGGTCATTTCTTAGGAGCTGA 1545 |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1525 TGGCGGATTGGGACAGGAACAGGACCTTGGTCTTTTCTTAGGAGCTGA 1572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76254627855 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5