BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314700
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT1G53870.1 | Symbols: | Protein of unknown function (DUF567) ... 955 0.0
AT1G53900.1 | Symbols: | Eukaryotic translation initiation fac... 569 9e-162
AT1G53880.1 | Symbols: | Eukaryotic translation initiation fac... 569 9e-162
AT1G53890.3 | Symbols: | Protein of unknown function (DUF567) ... 425 2e-118
> AT1G53870.1 | Symbols: | Protein of unknown function (DUF567)
| chr1:20112262-20113121 FORWARD LENGTH=751
Length=751
Score = 955 bits (517), Expect = 0.0
Identities = 614/659 (93%), Gaps = 13/659 (2%)
Strand=Plus/Plus
Query 1 ATGCAAATATACAATCCAATTTCTCCGGTGAAAACCATGGTGAAGATTTATCCTCACCTG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 ATGCAAATATACAATCCTATTTCTCCGGTGAAAACCATGGTGAAGATTTATCCTCACCTG 93
Query 61 GCGTTTCCGGTGGATATTGG-TGTTGTAGAAGACAAGATTGTGCCCTACTTGACGAAGGA 119
|||||||||||||||| ||| || ||| ||||||||||| |||||||||| |||| |||
Sbjct 94 GCGTTTCCGGTGGATA-TGGACGTCGTACAAGACAAGATTTTGCCCTACTTAACGACGGA 152
Query 120 GCAAGAGAGTTTCACGATTTGGATGAAATCTTTGGTATTCCATAGCAAAGGCTGCACAGT 179
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 153 GCAAGAGAGGTTCACGATTTGGATGAAATCTTTGGTGTTCAATAGCAAAGGCTGCACAGT 212
Query 180 TTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAACTATAACTCCAAGAGTTGCAG 239
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 213 TTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAATTATGATTCCAAGAGTTGGAG 272
Query 240 TAATGAAGTTTATTTTATGGATTCATACGGGAAAATTTTGTTTACTTTACGTCAAAAGAA 299
|||||||||||| |||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 273 TAATGAAGTTTACTTTATGGATTTAAACGGCAAAATTTTGTTTACTTTACGTCAAAAGAA 332
Query 300 ATC-GGGATTCTTCAAATCTTGGGAAGGATATAACTCAACCGGGACCAGATTTCGACTAA 358
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 A-CTGGGATTCTTCAAATCTTGGGAAGGATATAACTCAACCGGGACCAGATTTCGACTAA 391
Query 359 GAAAGATTTTCAAGATTTTGCCAAGAGATTCATCTT------ACAAAGTTGTAATGGGAT 412
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 392 GAAAGATTTTCAAGATTTTGCCAAGAGAATCATCTTCGTCTTACAAAGTTGTAATGGGAT 451
Query 413 CGCGCATAGTTGATGGTGGTGATCAACAGTCTTGTTATAAGATTGTAAACCGCGGGTCCG 472
| |||||||||||||||| ||||||| |||||||||||||||||||| || || || |
Sbjct 452 CACGCATAGTTGATGGTG---ATCAACAATCTTGTTATAAGATTGTAAATCGTGGATCAG 508
Query 473 TTTTCGCAATCAAGGATGGGTCGGGAAGATTAATGGCAGAAGTTAAAAATAAACTATCGG 532
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 509 TTTTCGCAATCAAGGATGGATCGGGAAGATTAATGGCAGAAGTTAAAAACAAACTATCGG 568
Query 533 ATATTAGTGGTTTGGATCTTGGAGAAGATGTCTTGACAATGATGGTGGAGCCACAACTAG 592
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 569 ATATTAGTGGTTTGGATCTTGGAGATGATGTTTTGACAATGATGGTGGAGCCACAACTAG 628
Query 593 ATCATTCTATAATAATGGGTATTGTTATAGCTTATAGTCTTACCAAATGTAAATTGTGA 651
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 629 ATCATTCTTTAATAATGGGTATTGTTATAGCTTATAAACTTACCAAATGTAAATTGTGA 687
> AT1G53900.1 | Symbols: | Eukaryotic translation initiation factor
2B (eIF-2B) family protein | chr1:20127634-20131050 FORWARD
LENGTH=1959
Length=1959
Score = 569 bits (308), Expect = 9e-162
Identities = 482/564 (85%), Gaps = 20/564 (4%)
Strand=Plus/Plus
Query 37 ATGGTGAAGATTTATCCTCACCTGGCGTTTCCGGTGGATATTGGTGTTGTAGAAGACAAG 96
|||||||||||| ||||| || ||||||||| |||||| || | || | ||||| ||||
Sbjct 1 ATGGTGAAGATTCATCCTGACAAGGCGTTTCCTGTGGATTTTAGCGTGGGAGAAGGCAAG 60
Query 97 A-TTGTGCCCTACTTGACGAAGGAGCAAGAGAGTTTCACGATTTGGATGAAATCT-TTGG 154
| || ||| ||||| |||| |||| |||||||||||||||||||||||| |||| || |
Sbjct 61 ACTT-CGCCGTACTTAACGACGGAGAAAGAGAGTTTCACGATTTGGATGAGATCTCTT-G 118
Query 155 TATTCCATAGCAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGG 214
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTTTCATAGTAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGG 178
Query 215 ATAACTATAACTCCAAGAGTTGCAGTAATGAAGTTTATTTTATGGA-TTCATACGGGAAA 273
|||| ||||||||||||||||| ||| |||||||| ||||||| || |||||| |||
Sbjct 179 ATAATTATAACTCCAAGAGTTGTAGT---GAAGTTTACCTTATGGACTT-ATACGGCAAA 234
Query 274 ATTTTGTTTACTTTACGTCAAAAGAAATCGGGATTCTTCAAATCTTGGGAAGGATATAAC 333
|| |||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 235 ATCTTGTTTACATTACGTCAAAAGAAATTGGGATTATTCAAATCTTGGAAAGGATATAAC 294
Query 334 TCAACCGGGACCAGATTTCGACTAAGAAAGATTTTCAAGATTTTGCCAA-GAG---AT-T 388
||||||||||| ||||||| ||||||||| | |||||||| ||||||| | | || |
Sbjct 295 TCAACCGGGACAAGATTTCAACTAAGAAAAAACTTCAAGATATTGCCAAAGGGTTCATCT 354
Query 389 -CATCTTACAAAGTTGTAATGGGATCGCGCATAGTTGATGGTGGTGATCAACAGTCTTGT 447
|||| ||||||||||||||||||||||| ||||||||||||| | ||||| ||||||
Sbjct 355 TCATCATACAAAGTTGTAATGGGATCGCGTATAGTTGATGGTGATCATCAA---TCTTGT 411
Query 448 TATAAGATTGTAAACCGCGGGTCCGTTTTCGCAATCAAGGATGGGTCGGGAAGATTAATG 507
|||||||||||||| ||| || |||||| ||||| ||||||| || ||||||||| ||
Sbjct 412 TATAAGATTGTAAAACGCAAATCGGTTTTCACAATCGAGGATGGATCAGGAAGATTATTG 471
Query 508 GCAGAAGTTAAAAATAAACTATCGGATATTAGTGGTTTGGATCTTGGAGAA-GATGTCTT 566
|||||||||||||| |||| ||| |||| | |||| |||||||| ||| ||||| ||
Sbjct 472 GCAGAAGTTAAAAAGAAACAATCAAATATCAAAAGTTTAGATCTTGG-GAAAGATGTATT 530
Query 567 GACAATGATGGTGGAGCCACAACT 590
|||||||||||||||||||||||
Sbjct 531 AACAATGATGGTGGAGCCACAACT 554
> AT1G53880.1 | Symbols: | Eukaryotic translation initiation factor
2B (eIF-2B) family protein | chr1:20115069-20118485 FORWARD
LENGTH=1959
Length=1959
Score = 569 bits (308), Expect = 9e-162
Identities = 482/564 (85%), Gaps = 20/564 (4%)
Strand=Plus/Plus
Query 37 ATGGTGAAGATTTATCCTCACCTGGCGTTTCCGGTGGATATTGGTGTTGTAGAAGACAAG 96
|||||||||||| ||||| || ||||||||| |||||| || | || | ||||| ||||
Sbjct 1 ATGGTGAAGATTCATCCTGACAAGGCGTTTCCTGTGGATTTTAGCGTGGGAGAAGGCAAG 60
Query 97 A-TTGTGCCCTACTTGACGAAGGAGCAAGAGAGTTTCACGATTTGGATGAAATCT-TTGG 154
| || ||| ||||| |||| |||| |||||||||||||||||||||||| |||| || |
Sbjct 61 ACTT-CGCCGTACTTAACGACGGAGAAAGAGAGTTTCACGATTTGGATGAGATCTCTT-G 118
Query 155 TATTCCATAGCAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGG 214
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGTTTCATAGTAAAGGCTGCACAGTTTTTGATTCCAAAGGAAACTTAATCTATCGAGTGG 178
Query 215 ATAACTATAACTCCAAGAGTTGCAGTAATGAAGTTTATTTTATGGA-TTCATACGGGAAA 273
|||| ||||||||||||||||| ||| |||||||| ||||||| || |||||| |||
Sbjct 179 ATAATTATAACTCCAAGAGTTGTAGT---GAAGTTTACCTTATGGACTT-ATACGGCAAA 234
Query 274 ATTTTGTTTACTTTACGTCAAAAGAAATCGGGATTCTTCAAATCTTGGGAAGGATATAAC 333
|| |||||||| |||||||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 235 ATCTTGTTTACATTACGTCAAAAGAAATTGGGATTATTCAAATCTTGGAAAGGATATAAC 294
Query 334 TCAACCGGGACCAGATTTCGACTAAGAAAGATTTTCAAGATTTTGCCAA-GAG---AT-T 388
||||||||||| ||||||| ||||||||| | |||||||| ||||||| | | || |
Sbjct 295 TCAACCGGGACAAGATTTCAACTAAGAAAAAACTTCAAGATATTGCCAAAGGGTTCATCT 354
Query 389 -CATCTTACAAAGTTGTAATGGGATCGCGCATAGTTGATGGTGGTGATCAACAGTCTTGT 447
|||| ||||||||||||||||||||||| ||||||||||||| | ||||| ||||||
Sbjct 355 TCATCATACAAAGTTGTAATGGGATCGCGTATAGTTGATGGTGATCATCAA---TCTTGT 411
Query 448 TATAAGATTGTAAACCGCGGGTCCGTTTTCGCAATCAAGGATGGGTCGGGAAGATTAATG 507
|||||||||||||| ||| || |||||| ||||| ||||||| || ||||||||| ||
Sbjct 412 TATAAGATTGTAAAACGCAAATCGGTTTTCACAATCGAGGATGGATCAGGAAGATTATTG 471
Query 508 GCAGAAGTTAAAAATAAACTATCGGATATTAGTGGTTTGGATCTTGGAGAA-GATGTCTT 566
|||||||||||||| |||| ||| |||| | |||| |||||||| ||| ||||| ||
Sbjct 472 GCAGAAGTTAAAAAGAAACAATCAAATATCAAAAGTTTAGATCTTGG-GAAAGATGTATT 530
Query 567 GACAATGATGGTGGAGCCACAACT 590
|||||||||||||||||||||||
Sbjct 531 AACAATGATGGTGGAGCCACAACT 554
> AT1G53890.3 | Symbols: | Protein of unknown function (DUF567)
| chr1:20124843-20126109 FORWARD LENGTH=863
Length=863
Score = 425 bits (230), Expect = 2e-118
Identities = 271/291 (93%), Gaps = 2/291 (1%)
Strand=Plus/Plus
Query 1 ATGCAAATATACAATCCAATTTCTCCGGTGAAAACCATGGTGAAGATTTATCCTCACCTG 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 ATGCAAATATACAATCCTATTTCTCCGGTGAAAACCATGGTGAAGATTTATCCTCACCTG 77
Query 61 GCGTTTCCGGTGGATATTGGT-GTTGTAGAAGACAAGATTGTGCCCTACTTGACGAAGGA 119
||||||||||||||||| || || ||| ||||||||||| |||||||||| |||| |||
Sbjct 78 GCGTTTCCGGTGGATAT-GGACGTCGTACAAGACAAGATTTTGCCCTACTTAACGACGGA 136
Query 120 GCAAGAGAGTTTCACGATTTGGATGAAATCTTTGGTATTCCATAGCAAAGGCTGCACAGT 179
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 137 GCAAGAGAGGTTCACGATTTGGATGAAATCTTTGGTGTTCAATAGCAAAGGCTGCACAGT 196
Query 180 TTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAACTATAACTCCAAGAGTTGCAG 239
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||
Sbjct 197 TTTTGATTCCAAAGGAAACTTAATCTATCGAGTGGATAATTATGATTCCAAGAGTTGGAG 256
Query 240 TAATGAAGTTTATTTTATGGATTCATACGGGAAAATTTTGTTTACTTTACG 290
|||||||||||| |||||||||| | |||| ||||||||||||||||||||
Sbjct 257 TAATGAAGTTTACTTTATGGATTTAAACGGCAAAATTTTGTTTACTTTACG 307
Score = 363 bits (196), Expect = 2e-99
Identities = 241/261 (92%), Gaps = 9/261 (3%)
Strand=Plus/Plus
Query 326 GATATAACTCAACCGGGACCAGATTTCGACTAAGAAAGATTTTCAAGATTTTGCCAAGAG 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 GATATAACTCAACCGGGACCAGATTTCGACTAAGAAAGATTTTCAAGATTTTGCCAAGAG 366
Query 386 ATTCATCTT------ACAAAGTTGTAATGGGATCGCGCATAGTTGATGGTGGTGATCAAC 439
| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 367 AATCATCTTCGTCTTACAAAGTTGTAATGGGATCACGCATAGTTGATGGTG---ATCAAC 423
Query 440 AGTCTTGTTATAAGATTGTAAACCGCGGGTCCGTTTTCGCAATCAAGGATGGGTCGGGAA 499
| |||||||||||||||||||| || || || |||||||||||||||||||| |||||||
Sbjct 424 AATCTTGTTATAAGATTGTAAATCGTGGATCAGTTTTCGCAATCAAGGATGGATCGGGAA 483
Query 500 GATTAATGGCAGAAGTTAAAAATAAACTATCGGATATTAGTGGTTTGGATCTTGGAGAAG 559
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 484 GATTAATGGCAGAAGTTAAAAACAAACTATCGGATATTAGTGGTTTGGATCTTGGAGATG 543
Query 560 ATGTCTTGACAATGATGGTGG 580
|||| ||||||||||||||||
Sbjct 544 ATGTTTTGACAATGATGGTGG 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5