BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg314728

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54210.1 | Symbols: APG12, ATG12A, ATATG12 | Ubiquitin-like ...   499    5e-141


> AT1G54210.1 | Symbols: APG12, ATG12A, ATATG12 | Ubiquitin-like 
superfamily protein | chr1:20241245-20242563 FORWARD LENGTH=631
Length=631

 Score =  499 bits (270),  Expect = 5e-141
 Identities = 284/291 (98%), Gaps = 0/291 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGATGGAGTCGTCGTCCCCGGGCTCTGTTCGGAAAGTTGTTGTTCATCTAAGAGCT  60
            ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  34   ATGGCGACGGAGTCGTCGTCCCCGAGCTCTGTTCGGAAAGTTGTTGTTCATCTAAGAGCT  93

Query  61   ACTGGAGGTGCTCCTATACTCAAACAATCTAAGTTCAAGATTCCGGGGACTGATAAATTT  120
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  94   ACTGGAGGTGCTCCTATACTCAAACAATCTAAGTTCAAGATTCCAGGGACTGATAAATTT  153

Query  121  GCTAAAGTGATTGACTTTCTAAGAAGACAGCTTCATTCTGACTCATTGTTTGTCTATGTG  180
            || ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct  154  GCCAAAGTGATTGACTTTCTTAGAAGACAGCTTCATTCTGATTCGTTGTTTGTCTATGTG  213

Query  181  AATAGTGCTTTCTCGCCAAACCCTGATGAATCAGTCATTGATCTTTATAATAACTTTGGA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  214  AATAGTGCTTTCTCGCCAAACCCTGATGAATCAGTCATTGATCTTTATAATAACTTTGGA  273

Query  241  TTTGATGGTAAACTGGTGGTTAACTATGCTTGTTCCATGGCATGGGGCTAA  291
            |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  274  TTTGATGGTAAACTGGTGGTTAACTATGCTTGTTCCATGGCATGGGGCTAA  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13421488983


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5