BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg314809 Length=1158 Score E Sequences producing significant alignments: (Bits) Value AT1G55960.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 1550 0.0 AT3G13062.2 | Symbols: | Polyketide cyclase/dehydrase and lipi... 689 0.0 AT2G01372.1 | Symbols: | Pseudogene of AT3G13062 | chr2:169967... 178 1e-43 > AT1G55960.1 | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:20927643-20930017 REVERSE LENGTH=1723 Length=1723 Score = 1550 bits (839), Expect = 0.0 Identities = 1085/1196 (91%), Gaps = 47/1196 (4%) Strand=Plus/Plus Query 9 CTGGGCTTTGTCTTTCTTCTCCGAAGAACTTTCCCGGCGAGCTCTTTCTGATTCTTATTT 68 |||||||||||||||||||||||| |||||||| ||||||||| |||| |||| |||||| Sbjct 210 CTGGGCTTTGTCTTTCTTCTCCGACGAACTTTCTCGGCGAGCTGTTTCCGATTGTTATTT 269 Query 69 ATGGGCCACCGCGATTTCGcttctcttaatccttctatttcatatcttcttttcctctaa 128 |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 270 ATGGACCACCGCGATTTCGCTTCTCTTAATCCTTCTCCTTCATATCTTCTTTTCCACTAA 329 Query 129 atttcgcttcttcacttct--t-cttcttcttc-tc--cttc-AC--CTAC--CGAATCA 177 ||||||||||||||||||| | |||||||||| || |||| | || | | || Sbjct 330 ATTTCGCTTCTTCACTTCTGCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCC 389 Query 178 GT-TTC----TCA--TGCCATAAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGA 230 | | | ||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 390 CTCTACAGAATCAGTTCCCGCGAACTCTCAATCAAGGATATCCAAACTAGTCTCTGATGA 449 Query 231 AGATTTGAAATTTCTGATCGAGAATTT---GGAGGAAACAAATGATTCTACGGAGATATG 287 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| Sbjct 450 AGATTTGAAATTTCTGATCGAGAATTTGGAGGAGGAAACAAATGATTCCACGGAGATATG 509 Query 288 GGAAAATGTTATTCACAAAAGCAACCATCGCATTTCATACACTGCTAAACGCTGCAAACC 347 |||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 510 GGAACATGTTATTCACAAAAGCAACGATCGCATTTCATACTCTGCTAAACGCTGCAAACC 569 Query 348 CAAAGATGGTGGTGGTCCTATGAAGTACCTAAGTGTTACGGTCTTCGAGGATTGCTCTGC 407 ||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||| Sbjct 570 CAAAGATGGCGGTGGTCCTATGAAGTACCTAAGTGTCACGGTCTTCGAGGGTTTCTCTGC 629 Query 408 AGAGATTGTGAGGGATTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGT 467 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 AGAGATTGTGAGGGACTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGT 689 Query 468 TGTTGAGCATGAGCAGTTGCAGGTTGACAGTAGTACCGGAATTGAGATTGGTCGCACAAT 527 |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || Sbjct 690 GGTTGAGCATGAGCAGTTGCAGGTTGATAGTAATACTGGAATTGAGATTGGTCGCACCAT 749 Query 528 CAAAAAGTTTCCCTTGTTGACATCAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGG 587 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 750 TAAAAAGTTTCCCTTGTTGACATCGAGAGAGTACGTTCTAGCTTGGAGATTGTGGCAAGG 809 Query 588 AAAGG-G--CAAGTTTTACTGTTTCACAAAGGAATGTGATCACAATATGGTGCCGCAACA 644 ||||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 810 AAAGGAGAAGAAGTTCTACTGTTTCACAAAGGAATGTGATCACAATATGGTACCACAACA 869 Query 645 GAGGAATTACGTACGTGTAAG---C--T--AT-T--TT--AG-AT----C-TGTTCCCGG 686 |||||| || ||||||||||| | | || | || | || | |||||||| Sbjct 870 GAGGAAGTATGTACGTGTAAGTTACTTTAGATCTGGTTGGCGAATCAGGCAAGTTCCCGG 929 Query 687 TCGAAATGCTTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGAT 746 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 930 TAGAAATGCGTGTGAGATCAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGAT 989 Query 747 GGCGAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCT 806 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 990 GGCCAAGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCT 1049 Query 807 TTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTTTATCTGCTGTCACCTT 866 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1050 TTGTAAATACATAGCAACCAGTCATAGAACCCAAGGACCCATTCTATCTGCTGTCACCTT 1109 Query 867 AATGAAAAAGGTTCCATCAGAGTTAGAAACTCAGACAGATAATGTCACAGCCTCCATTGG 926 ||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||| Sbjct 1110 AATGAAAGAGGTTCCATCAGAGTTAGAAACTGGGACAGATAATGTCACAGGCTCCA-TGG 1168 Query 927 -AACAAGTAGTGGTGAAGGACTGTTAAGTCATGTTGTA---GCCAAACAGAAGAAAAAAT 982 ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||| Sbjct 1169 AAACAAGTAGTGGTGAAGGAGTGTTGAGTCATGTTGTAGCCGCCAAACAGAAGAAAAAAA 1228 Query 983 TGAGAAAGCCATCAAAGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCT 1042 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1229 TGAGAAAGCCATCAACGAAACTGATAGCAAAAGGTCTAGTACTTGTGGGCGGTGCGATCT 1288 Query 1043 GTTTGTCCCGTGGTCACTCCGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGA 1102 | ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1289 GCTTGTCCCGTGGTCCCTCAGCCTTAGGTGCTAAAGTCGCATTGGCTTACCTCTTGACGA 1348 Query 1103 AGCTGAACAAACGTGGAACTTCTCTGAATCAGACCATCCAGAACACCAGCATTTAA 1158 |||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| Sbjct 1349 AGCTGAACAAACGTGGAACTTCTCTGAATCAGACCACCCAGACCACCACCATTTAA 1404 > AT3G13062.2 | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr3:4184569-4187453 FORWARD LENGTH=1716 Length=1716 Score = 689 bits (373), Expect = 0.0 Identities = 877/1109 (79%), Gaps = 80/1109 (7%) Strand=Plus/Plus Query 63 TTATTTATGGGCCACCGCGATTTCGcttctcttaatccttctatttc-atatcttctttt 121 ||||| |||||||||| | | | ||| |||| || ||||| | | || ||||| ||| Sbjct 301 TTATTGCTGGGCCACCGTGCTCGCACTTGTCTTCATTCTTCTCTACCAAT-TCTTCCTTT 359 Query 122 cctc-taaatttcgcttcttcacttcttcttcttcttctccttcACCTACCGAATCAGTT 180 || | ||||| || ||||||| || | |||||||| |||| ||| || || ||| Sbjct 360 CC-CGGAAATTCCGATTCTTCA-GTC--ATGCTTCTTCTTCTTCCCCTGTCGTCTCGGTT 415 Query 181 TCTC-ATGC-CATAAACTCTCAATCAAGG-ATATC--C-AAACTAGTCTCTGATGAAGAT 234 |||| || | | | | ||| ||||| ||| ||||| | | ||| || |||||||||||| Sbjct 416 TCTCAAT-CTC-TCAGCTCCCAATC-AGGAATATCTACTACACTTGTTTCTGATGAAGAT 472 Query 235 TTGAAA-TTTCTGA-TCGAGAATTTGGAGGAAACAAATGATTCTACGGAGATATGGGAAA 292 | ||| ||||| || | || |||| ||||| || ||| | | |||||||||||| Sbjct 473 CT-AAAGGGTCTGATTC-AAAAATTGGGGGAAAGAAGTGAGGATGCTGAGATATGGGAAG 530 Query 293 ATGTTATTCACAAAAGCAACCATCGCATTTCATACACTGCTAAACGCTGCAAACCCAAAG 352 |||||||| | |||||||||| ||| || || |||||||||||| |||||||| || || Sbjct 531 ATGTTATTAAGAAAAGCAACCCTCGTATCTCCTACACTGCTAAATGCTGCAAA-CC-AAC 588 Query 353 ATGGTGGTGGTCCTATGAAGTACCTAAGTGTTACGGTCTTCGAGGATTGCTCTGCAGAGA 412 | | |||| |||| |||||||| || ||| || || || ||||||||||| ||||| Sbjct 589 A-GATGGTAGTCCCATGAAGTATCTGAGTACAACTGTGTTTGAGGATTGCTCCCCAGAGG 647 Query 413 TTGTGAGGGATTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGTTGTTG 472 || ||||||| ||||||||||||||||| || ||||||| |||||| |||||||| |||| Sbjct 648 TTTTGAGGGACTTTTACATGGACAATGAATACAGGAAACAATGGGACAAGACTGTGGTTG 707 Query 473 AGCATGAGCAGTTGCAGGTTGACAGTAGTACCGGAATTGAGATTGGTCGCACAATCAAAA 532 |||||||||| |||||||||||||||| || || ||||||||||||||||| || |||| Sbjct 708 AGCATGAGCAATTGCAGGTTGACAGTAATAGTGGGATTGAGATTGGTCGCACTATAAAAA 767 Query 533 AGTTTCCCTTGTTGACAT-CAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGGAAAG 591 |||||||||||||||| | |||| ||||| ||| |||| |||| ||||||| | || ||| Sbjct 768 AGTTTCCCTTGTTGAC-TCCAAGGGAGTATGTATTAGCGTGGAAATTGTGGGAGGGGAAG 826 Query 592 GGCAAGTTTTACTGTTTCA-CAAAGGAATGTGATCACAATATGGTGCCGCAACAGAGGAA 650 | |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 827 GATAAGTTTTACTGTTTCATC-AAGGAATGTGATCACAATATGGTGCCGCAACAGAGGAA 885 Query 651 TTACGTACGTGTAAGCTATTTTAGATCTG-TTCCCG-----G-----T-C--G--A--AA 692 || ||||||||||| ||||| ||||||| || || | | | | | || Sbjct 886 GTATGTACGTGTAAGTTATTTCAGATCTGGTTGGCGAATTAGGAAAGTTCCTGGTAGGAA 945 Query 693 TGCTTGTGAGAT-CAAAATGTTTCACCAGGAGAATGCTGGGTTAAATGTTGAGATGGCGA 751 ||||||||||| || | || ||||||||||| ||||||| ||||||||||||||||| | Sbjct 946 CGCTTGTGAGATACACA-TGGTTCACCAGGAGGATGCTGGATTAAATGTTGAGATGGCAA 1004 Query 752 AGCTCGCCTTCTCAAAAGGCATATGGAGTTACGTTTGTAAGATGGAAAACGCTCTTTGTA 811 |||| || ||||||| ||||||||||||||||||||||||||||||||| || ||| | | Sbjct 1005 AGCTTGCTTTCTCAAGAGGCATATGGAGTTACGTTTGTAAGATGGAAAATGCACTTCGCA 1064 Query 812 AATACATAGCAACCAGTCATAGAACCCAAGGACCCATTTTATCTGCTGTCACCTTAATGA 871 | ||||| |||||||||||| || ||||||| |||| ||||||||||| | |||||||| Sbjct 1065 AGTACATTGCAACCAGTCATCGACCCCAAGGGCCCACATTATCTGCTGTAAGCTTAATGA 1124 Query 872 AAAAGGTTCCATCAGAGTTAGAAACTCAGACAGAT-A-ATGTCACAGCCTCCATTGG-AA 928 ||||| ||||||| |||||||||| ||||||||| | || | ||| |||| | || || Sbjct 1125 AAAAGATTCCATCGGAGTTAGAAAGTCAGACAGACGACAT-T-ACAAACTCC-TCGGGAA 1181 Query 929 C-A--AGTAGTGGTGAAGGACTGTTAAGTCATGTTGTAGCCAAACAGAAGAAAAAATTGA 985 | | | ||||||| | | || | || | | | |||||||| ||||||| |||| Sbjct 1182 CTACCACTAGTGGT-ATGCACAC--AGGTGAAG--G-AGCCAAACGGAAGAAACTGTTGA 1235 Query 986 GAAAGCCATCAAAGAAACTGATAGCAAAAGGTCTAGT-ACTTGTGGGCGGTGC-GATC-T 1042 ||||||| |||||||||||||||||||| ||| | || ||||||||||||||| | | | Sbjct 1236 GAAAGCCTTCAAAGAAACTGATAGCAAATGGTAT-GTTACTTGTGGGCGGTGCCGTTGGT 1294 Query 1043 G-T----T-TGTC---C-CGTGGTCACTCCGCCTTAGGTGCTAAAG-TCGCATTGGCTTA 1091 | | | || | | |||||||||||||||||||| || |||| |||| |||||||| Sbjct 1295 GGTGCAATCTGCCTGTCTCGTGGTCACTCCGCCTTAGGGGC-AAAGGTCGCGTTGGCTTA 1353 Query 1092 CCTCTTGACGAAGCTGAACAAA-CGTGGA 1119 | ||||| ||||| ||| ||| |||||| Sbjct 1354 CTTCTTGTCGAAGATGAG-AAAGCGTGGA 1381 > AT2G01372.1 | Symbols: | Pseudogene of AT3G13062 | chr2:169967-170613 REVERSE LENGTH=647 Length=647 Score = 178 bits (96), Expect = 1e-43 Identities = 218/269 (81%), Gaps = 40/269 (15%) Strand=Plus/Plus Query 352 GATGGTGGTGGTCCTATGAAGT-ACCTAAGTGTTACGGTCTTCGAGGATTGCTCTGCAGA 410 |||||||||||||||||||||| |||||||||| ||||| || || | | || Sbjct 143 GATGGTGGTGGTCCTATGAAGTAACCTAAGTGTCACGGTATT---TGA--G----G--GA 191 Query 411 GATTGTGAGGGATTTTTACATGGACAATGATTATAGGAAACTATGGGATAAGACTGTTGT 470 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 192 GATTGTGAGGGACTTTTACATGGACAATGATTATAGAAAACTATGGGATAAGAC------ 245 Query 471 TGAGCATGAGCAGTTGCAGGTTGACAGTAGTACCGGAATTGAGATTGGTCGCACAATCAA 530 | | | |||||||||||||| |||| || ||||||||||| | | || Sbjct 246 T--G--T---CAGTTGCAGGTTGATAGTAATAGCGGAATTGAGA----T-------T-AA 286 Query 531 AAAGTTTCCCTTGTTGACATCAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGGAAA 590 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 287 AAAGTTTCCCTTGTTGACGTCAAGAGAGTACGTACTAGCTTGGAGATTGTGGCAAGGAAA 346 Query 591 GGGCAAGT--TT-TACTGTTTCACAAAGG 616 || |||| || |||||||||||||||| Sbjct 347 GGACAAGAAGTTGTACTGTTTCACAAAGG 375 Score = 163 bits (88), Expect = 3e-39 Identities = 94/97 (97%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 782 ACGTTTGTAAGATGGAAAACGCTCTTTGTAAATACATAGCAACCAGTCATAGAACCCAAG 841 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 550 ACGTTTGTAAGATGGAAAACGCTCTTTGTAAATACATAGCCACCAGTCATAGAACCCAAG 609 Query 842 GACCCATTTTATCTGCTGTCACCTTAATGAAAAAGGT 878 |||||||||| |||||||| ||||||||||||||||| Sbjct 610 GACCCATTTTCTCTGCTGTTACCTTAATGAAAAAGGT 646 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56827016940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5