BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg314969
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT1G64710.1 | Symbols: | GroES-like zinc-binding dehydrogenase... 1772 0.0
> AT1G64710.1 | Symbols: | GroES-like zinc-binding dehydrogenase
family protein | chr1:24044545-24046552 FORWARD LENGTH=1523
Length=1523
Score = 1772 bits (959), Expect = 0.0
Identities = 1098/1162 (94%), Gaps = 21/1162 (2%)
Strand=Plus/Plus
Query 1 ATGGAAACACAAGGCAAAGTAATCACTTGCAGAGCTGCTGTGGCATGGGGAGCTGGAGAA 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 142 ATGGAAACACAAGGCAAAGTAATCACTTGCAAAGCTGCTGTGGCATGGGGAGCTGGAGAG 201
Query 61 CCTCTAGTGATGGAAGATGTAAAAGTGGATCCTCCTCAAAGATTGGAAGTGAGACTTCGA 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 202 CCTCTAGTAATGGAAGATGTAAAAGTGGATCCTCCTCAAAGATTGGAAGTGAGAATTCGA 261
Query 121 ATCCTCTTCACTTCCATCTGTCACACTGATCTTAGCGCATGGAAAGGCGAGAACGAGTCT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 262 ATCCTCTTCACTTCCATCTGTCACACTGATCTCAGCGCATGGAAAGGCGAGAACGAGGCT 321
Query 181 CAGCGAGCATACCCTCGAATCCTTGGCCATGAGGCGGCAGGGATAGTGGAGAGCGTAGGG 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 322 CAGCGAGCATACCCTCGAATCCTTGGCCATGAGGCAGCAGGGATAGTGGAGAGCGTAGGG 381
Query 241 GAAGGAGTGGAAGAGATGAAGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGT 300
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 382 GAAGGTGTGGAAGAGATGATGGCAGGAGATCATGTGCTCCCTATTTTCACAGGAGAGTGT 441
Query 301 GGAGATTGCAGAGTCTGCAAGCAAGACGAAGCCAATCTGTGCGAGAGATTCCGAGTGGAT 360
||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 442 GGAGACTGCAGAGTGTGCAAGCGAGACGGAGCCAATCTGTGCGAGAGATTCCGAGTGGAT 501
Query 361 CCGATGAAGAAGGTGATGGCAACCGATGGCAAGACCAGATTCTTCACAAGCAAAGACAAC 420
||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||
Sbjct 502 CCGATGAAGAAGGTGATGGTAACCGATGGAAAGACCAGATTCTTCACCAGCAAAGACAAC 561
Query 421 AAACCCATCTACCATTTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 AAACCAATCTACCATTTTCTCAACACATCCACCTTCTCCGAGTACACGGTCATAGACTCG 621
Query 481 GCTTGCGTGCTCAAGGTGAACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGC 540
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 622 GCCTGCGTGCTCAAGGTGGACCCTCTGTTTCCTCTGGAGAAGATAAGCCTCCTCAGCTGC 681
Query 541 GGTGTCTCCACTGATAAGTGTTTATGGAATGAAGGAGTCGGTGCGGCGTGGAATGTGGCT 600
||||||||||| | |||||||||||||||||||||||||||
Sbjct 682 GGTGTCTCCAC------------------T---GGAGTCGGTGCGGCGTGGAATGTGGCT 720
Query 601 GATATTCAACCTGGCTCCACCGTCGCTATATTTGGACTTGGCGCTGTTGGACTTGCCGTG 660
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 GATATTCAACCTGCCTCCACCGTCGCTATTTTTGGACTTGGCGCTGTTGGACTTGCCGTG 780
Query 661 GCTGAAGGTGCAAGAGTCAGGGGAGCCTCTAAAATCATTGGGATCGACGTCAACCCTGAC 720
|||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 781 GCTGAAGGTGCAAGAGCCAGAGGAGCCTCTAAAATCATTGGGATCGACATCAACCCTGAC 840
Query 721 AAGTTCCCATTAGGCAGAGAAGCAGGGATCAGTGAATTCATAAATCCAAAGGAGAGTGAC 780
||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 AAGTTCCAACTAGGCAGAGAAGCAGGGATTAGTGAATTCATAAATCCAAAGGAGAGTGAC 900
Query 781 AAGGCAGTTCATGAGAGAGTAAGGGAGATAACAGAGGGAGGAGTGGAGTGCAGCTTTGAG 840
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 901 AAGGCAGTTCATGAGAGAGTAATGGAGATAACAGAGGGAGGAGTGGAGTACAGCTTCGAG 960
Query 841 TGTGCGGGAAGCATAGAAGCACTTAGAGAAGCCTTTCTGTCTACTAACTCAGGAGTGGGA 900
||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 961 TGTGCAGGAAGTATAGAAGCACTTAGAGAAGCCTTTCTGTCTACAAACTCAGGAGTGGGA 1020
Query 901 GTGACAGTGTTGCTGGGCGTTCACGCAAGCCCACAGCTTCTTCCTATCCATCCCATGGAG 960
||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1021 GTGACTGTCATGCTGGGCGTTCACGCAAGCCCACAGCTTCTCCCTATCCATCCCATGGAG 1080
Query 961 CTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACCCAA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTCTTCCAAGGCAGATCCATCACCGCCTCTGTTTTCGGAGGCTTCAAACCCAAAACCCAA 1140
Query 1021 TTACCCTTTCTCATCACCCAATGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATCTCT 1080
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TTACCCTTTTTCATCACCCAGTGCCTCCAAGGTCTTCTCAATCTCGATCTCTTCATCTCT 1200
Query 1081 CACCAGCTTCCATTCCACGATATCAACAAAGCCATGCAGCTGCTTCACCAAGGCAAAGCT 1140
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1201 CACCAGCTTCCCTTCCACGATATCAACGAAGCCATGCAGCTGCTTCACCAAGGCAAAGCT 1260
Query 1141 ATTCGTTGCCTTCTCCGCCTCT 1162
||||||||||||||| |||||
Sbjct 1261 CTTCGTTGCCTTCTCCACCTCT 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5