BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315014

Length=864
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G64200.1 | Symbols: VHA-E3 | vacuolar H+-ATPase subunit E is...  1157    0.0  
  AT1G64195.1 | Symbols:  | Defensin-like (DEFL) family protein |...   241    1e-62


> AT1G64200.1 | Symbols: VHA-E3 | vacuolar H+-ATPase subunit E 
isoform 3 | chr1:23828526-23830002 REVERSE LENGTH=725
Length=725

 Score = 1157 bits (626),  Expect = 0.0
 Identities = 674/698 (97%), Gaps = 0/698 (0%)
 Strand=Plus/Plus

Query  1    ATGAACGACGCCGATGCTTCCGTCCAGATCCAGCAGATGGTCAGGTTTATCCGCCAGGAA  60
            ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGAACGACGCCGATGCTTCCATCCAGATCCAGCAGATGGTTAGGTTTATCCGCCAGGAA  60

Query  61   GCCGAAGAAAAGGCTAACGAGATCTCCATCTCCTCCGAGGAAGAATTCAACattgagaaa  120
            ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  61   GCCGAAGAAAAGGCTAACGAGATCTCCATCTCCTCTGAAGAAGAATTCAACATTGAGAAA  120

Query  121  ttgcagattgttgaagcagagaagaagaagattagacaagagtatgagaagaaggagaaa  180
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TTGCAGCTTGTTGAAGCAGAGAAGAAGAAGATTAGACAAGAGTATGAGAAGAAGGAGAAA  180

Query  181  caggtcgatgtcagaaagaagaTTGATTACTCGATGCAACTGAACGCGTCGAGGATCAAG  240
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| 
Sbjct  181  CAGGTCGATGTCAGAAAGAAGATTGATTACTCAATGCAACTGAACGCATCGAGGATCAAA  240

Query  241  GTTCTACAAGCCCAAGATGACATTGTCAATGCAATGAAAGAAGAGGCAGCTAAGGAACTC  300
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  241  GTTCTACAAGCGCAAGATGACATTGTCAATGCAATGAAAGAAGAGGCAGCTAAGCAACTC  300

Query  301  TTGAAAGTTAGCCAACATGGCTTTTTCAATCATCATCACCATCAGTATAAGCATCTCTTG  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTGAAAGTTAGCCAACATGGCTTTTTCAATCATCATCACCATCAGTATAAGCATCTCTTG  360

Query  361  AAAGATCTCATTGTTCAGTGTTTGCTTCGATTGAAAGAGCCTGCAGTGTTACTTCGTTGT  420
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct  361  AAAGATCTCATTGTTCAGTGTTTGCTTAGATTGAAAGAGCCTGCAGTGTTACTCCGTTGT  420

Query  421  CGTAAAGAAGATCTTCACATGGTTGAGTCTATGCTGGATGATGCTAGTGAAGAATATTGC  480
            ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct  421  CGTGAAGAAGATCTTGACATTGTTGAGTCTATGCTGGATGATGCTAGTGAAGAATATTGC  480

Query  481  AAGAAAGCAAAGGTTCATGCTCCTGAGATCATTGTCGACAAGGACATTTTCCTTCCTCCT  540
            ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct  481  AAGAAAGCAAAGGTTCATGCTCCTGAGATTATTGTAGACAAGGACATTTTCCTTCCTCCT  540

Query  541  GCTCCTTCAGATGATGATCCTCATGCTCTTTCCTGTGCAGGAGGAGTGGTGTTGGCTTCT  600
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  541  GCTCCTTCAGATGATGATCCTCATGCTCTTTCCTGTGCAGGAGGAGTGGTTTTGGCTTCT  600

Query  601  CGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAAGTTGCGTTCCGC  660
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  601  CGTGATGGGAAAATCGTGTGTGAAAACACGCTTGATGCGAGGTTGGAGGTTGCCTTCCGC  660

Query  661  AATAAACTTCCCGAGATACGAAAGTCACTCTTTGGCAA  698
            ||||||||||| ||||| |||||||| ||||| |||||
Sbjct  661  AATAAACTTCCAGAGATCCGAAAGTCGCTCTTCGGCAA  698


> AT1G64195.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr1:23827711-23828048 REVERSE LENGTH=219
Length=219

 Score =  241 bits (130),  Expect = 1e-62
 Identities = 150/160 (94%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  705  AGAAGCAAAAAGTATGAATCCAACGGGAAGACGATGCCCAGATCCTAACGGTGTGGACaa  764
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  60   AGATGCAAAAAGTATGAATCCAACGGGAAGACGATGCCCAGATCCTAACGGTGTGGAGAA  119

Query  765  aaaaaGTGTGTGTTATGGTTACTGTAAGACACAAGGTTTTATGGGTGGTTCTTGTCAAGG  824
             |||||| |||||||  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct  120  GAAAAGTATGTGTTACAGTTCCTGTAAGACACAAGGTTTTATGGGTGGTTCTTGTCAAGG  179

Query  825  CCACACGGGTAATTATATGTGCAAGTGTTATGAAGGATAA  864
            ||||| ||||||||| |||||| |||||||||||||||||
Sbjct  180  CCACAAGGGTAATTACATGTGCGAGTGTTATGAAGGATAA  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42146449333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5