BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315258
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60960.1 | Symbols: IRT3, ATIRT3 | iron regulated transporte... 1901 0.0
> AT1G60960.1 | Symbols: IRT3, ATIRT3 | iron regulated transporter
3 | chr1:22445310-22447214 REVERSE LENGTH=1532
Length=1532
Score = 1901 bits (1029), Expect = 0.0
Identities = 1206/1291 (93%), Gaps = 14/1291 (1%)
Strand=Plus/Plus
Query 1 ATGTTCTTCATCGATGTTCTTTGGAAATTGGTTCCTCTATACTTGTTCGGATCAGAAACA 60
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 155 ATGTTCTTCGTCGATGTTCTTTGGAAACTGGTTCCTCTATACTTGTTCGGATCAGAAACA 214
Query 61 GATTCTCTCTCAGCAACAGAGTCCATTTTGCAGATAGTTCCAGAGGCAATGGCTGCTACT 120
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 215 AAGTCTCTCTCAGCAACAGAGTCCATTTTGCAGATAGTTCCTGAGGCAATGGCTGCTACT 274
Query 121 TCATCTAATGTTCTATGCAATGCTAACGAGTCAGACCTTTGCCGTGATGATTCCGCTGCG 180
|||||||| || || |||||||||| ||||||||| ||||| |||||||||||||||||
Sbjct 275 TCATCTAACGTCCTTTGCAATGCTAGCGAGTCAGATCTTTGTCGTGATGATTCCGCTGCA 334
Query 181 TTTCTACTTAAATTTGTAGCCATTGCTTCTATTCTATTAGCTGGAGCTGCAGGTGTAACT 240
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 335 TTTCTACTTAAATTTGTAGCCATTGCTTCGATTCTCTTAGCTGGAGCTGCTGGTGTAACT 394
Query 241 ATACCACTCATTGGCAGGAACCGTCGGTTCCTTCAAACCGATAGTAATCTCTTTGTGACT 300
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 395 ATACCACTCATTGGCAGGAACCGTCGTTTCCTTCAAACTGATGGTAATCTCTTTGTGACT 454
Query 301 GCTAAAGCCTTTGCAGCTGGTGTGATCCTTGCCACGGGTTTTGTTCATATGTTGGCTGGT 360
|||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 455 GCTAAAGCTTTTGCAGCTGGTGTGATTCTCGCCACGGGTTTTGTTCATATGTTGGCGGGT 514
Query 361 GGCACGGAAGCTTTGAAGAACCCGTGCTTACCGGATTTCCCTTGGTCTAAGTTTCCGTTC 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 515 GGCACGGAAGCTTTGAAGAACCCGTGCTTACCGGATTTCCCTTGGTCTAAGTTTCCTTTC 574
Query 421 CCGGGGTTCTTTGCGATGGTTGCAGCTCTGATCACTCTGTTTGTGGAATTCTTGGGGACG 480
||||| |||||||||||| |||| ||| ||||||||||||||||||| ||| |||||||
Sbjct 575 CCGGGATTCTTTGCGATGATTGCTGCTTTGATCACTCTGTTTGTGGATTTCATGGGGACT 634
Query 481 CAGTACTATGAACGGAAGCAAGAGAGGGAAGCTAGTGAGTCTGTTGAACCGTCTGGCCGT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 635 CAGTACTATGAACGGAAGCAAGAGAGGGAAGCTAGTGAGTCTGTTGAACCGTTTGGCCGT 694
Query 541 GAACAATCACCGGGTATTGTTGTTCCCTTGGTTGCAGAAGGAACGAATGATGAGAAAGTG 600
||||||||||||||||||||||||||| || ||| ||||||||||||||||| |||||||
Sbjct 695 GAACAATCACCGGGTATTGTTGTTCCCATGATTGGAGAAGGAACGAATGATGGGAAAGTG 754
Query 601 TTTGGAGAAGAAGACAGTGGTGGGATTCACATTGTTGGCATTCATGCTCATGCTGCTCAT 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 TTTGGTGAAGAAGACAGTGGTGGGATTCACATTGTTGGCATTCATGCTCATGCTGCTCAT 814
Query 661 CATAGACATAGTCACCCTCCTGGTCATGGTTCATGTGAAGGACACAGTGAAATTGACATT 720
|||||||||||||| ||||||||||||| ||||||||||||||||||| |||| ||||||
Sbjct 815 CATAGACATAGTCATCCTCCTGGTCATGATTCATGTGAAGGACACAGTAAAATCGACATT 874
Query 721 GGGCATGCTcatggacacgggcacgggcatggacatggacatggacacgggcacggacac 780
|| |||||||||| || ||||||||||||||||| ||||||||||||| || ||
Sbjct 875 GGTCATGCTCATGCTCATGGGCACGGGCATGGACACGGACATGGACACGT--AC--AC-- 928
Query 781 gcacacgggggTGTGGATGCCGG-AAGTGGAGCTAGGCATATCGTTGTTTCTCAGGTTCT 839
| |||| | ||||||| | || |||||||||||||||||||||||||||||||||
Sbjct 929 G-----GGGGTT-TGGATGCTGTTAA-TGGAGCTAGGCATATCGTTGTTTCTCAGGTTCT 981
Query 840 GGAGCTTGGAATCGTGTCACATTCCATAATCATCGGTCTATCCCTTGGAGTATCTCAGTC 899
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GGAGCTTGGAATTGTGTCACATTCCATAATCATCGGTCTATCCCTTGGAGTATCTCAGTC 1041
Query 900 TCCTTGTACAATCCGGCCTTTAATTGCAGCACTATCCTTCCACCAATTCTTTGAAGGATT 959
|||||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 1042 TCCTTGCACAATCCGGCCTCTAATCGCAGCACTATCCTTCCATCAATTCTTTGAAGGATT 1101
Query 960 TGCGCTCGGTGGATGCATCTCCCAAGCGCAATTCAGGAACAAATCAGCAACCATAATGGC 1019
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1102 TGCGCTCGGTGGATGCATCTCCCAAGCGCAATTCAGGAACAAATCAGCGACCATAATGGC 1161
Query 1020 TTGTTTTTTCGCCCTCACAAGCCCGATAGGGATAGGGATTGGAACCGCAGTGGCATCCTC 1079
|||||||||||||||||||| |||||||||||| |||||||||||||||||||| || ||
Sbjct 1162 TTGTTTTTTCGCCCTCACAACCCCGATAGGGATCGGGATTGGAACCGCAGTGGCGTCGTC 1221
Query 1080 ATTCAATTCTCACAGCGTCGGAGCATTGGTCACTGAAGGTATCTTGGACTCGCTCTCAGC 1139
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 TTTCAATTCTCACAGTGTCGGAGCATTGGTCACTGAAGGTATCTTGGACTCGCTCTCAGC 1281
Query 1140 CGGAATTCTTGTTTACATGGCTTTGGTGGATCTCATAGCTGCTGATTTCTTGAGTACAAA 1199
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1282 CGGAATTCTTGTGTACATGGCTTTAGTGGATCTCATAGCTGCTGATTTCTTGAGTACAAA 1341
Query 1200 AATGAGCTGCAACTTTAGGCTTCAGATAGTATCTTACATAATGTTGTTCCTGGGAGCTGG 1259
|||||| || |||||||||||||| || |||||||| ||||||||||||| ||||||||
Sbjct 1342 AATGAGGTGTAACTTTAGGCTTCAAATTGTATCTTATGTAATGTTGTTCCTAGGAGCTGG 1401
Query 1260 ACTCATGTCTTCCCTTGCCATTTGGGCTTAA 1290
|||||||||||| ||||||||||||||||||
Sbjct 1402 ACTCATGTCTTCTCTTGCCATTTGGGCTTAA 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5