BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315473
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1022 0.0
> AT2G44870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to
39 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa
- 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr2:18503138-18504681 FORWARD
LENGTH=1118
Length=1118
Score = 1022 bits (553), Expect = 0.0
Identities = 692/756 (92%), Gaps = 21/756 (3%)
Strand=Plus/Plus
Query 1 ATGTGGCCTTCCACATCACCCAGATTCACCATCACCACACCTTATCCACACCCTGCGTAC 60
|||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
Sbjct 113 ATGTGGCCTTCCACATCACCTAGATTCACCATCACCACACCTTATCCACA--C--C---C 165
Query 61 ACTTCACGCGCCGCCTCTTTCTTACAGGTGAAAGCCTTCCAACGCGGTGACTTTGACCGT 120
|| | | |||| | |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 166 AC-GCGC-CGCCTCTTCTTTCTTACAGGTGAAAGCTTTCCAACGCGGCGACTTTGACCGT 223
Query 121 TTCGCTGATAACGTTAAGTCCGGGAAAGCTTGGAGAGACGCGTGGAGAAGCGCTAACGAT 180
|| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 224 TTGGCTGATAACGTTAAGTCAGGTAAAGCATGGAGAGACGCGTGGAGAAGCGCTAACGAT 283
Query 181 GGATTCGAGCAATTTGTTTTTGAGGCTAAGAAGACTGCTGAGCGAATTGATCGGCAATAC 240
|||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 284 GGATTCGAGCAATTCGTTTTTGAGGCTAAGAAAACCGCTGAGCGAATTGATCGCCAATAC 343
Query 241 GCTGTTTCTCGCCGGTTTAGCTCCGCTGCTAGTTCTGCTGGTGACCGTGCTCGTGAGATT 300
|||||||||||||| ||||||||||||||||| || || | |||||||||||||||||||
Sbjct 344 GCTGTTTCTCGCCGCTTTAGCTCCGCTGCTAGCTCAGCCGCTGACCGTGCTCGTGAGATT 403
Query 301 GATCGTGAGTTTGGGATTAGTCCTCGTGTTAGGAGTTTCTCTGCTGATTTGAGTAGAAAT 360
||||||||||||||||||| |||||||||||||| | ||||||| ||||| |||||||||
Sbjct 404 GATCGTGAGTTTGGGATTACTCCTCGTGTTAGGACTGTCTCTGCCGATTTCAGTAGAAAT 463
Query 361 TTCCCAAAGTACAGGAAGCAATTCAGTGCTTTCTTGAATACACCGCTCGGTGGAAGTTTT 420
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 464 TTCCCTAAGTACAGGAAGCAATTCAGTGCATTCTTGAATACACCGCTTGGTGGAAGTTTT 523
Query 421 GCTACTATTTTCTTTCTTTGGTTTGCCCTCTCTGGATGGCTATTCCGAGTAATAATAATC 480
|||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 524 GCTACTATTTTCTTCCTTTGGTTTGCTCTCTCTGGATGGCTGTTCCGAGTTATAATAATC 583
Query 481 GCGACTTGGGTTCTTCCAATTGCTGGCCCTCTTCTCATTGGTGCAGTGGCCAACAATTTT 540
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 584 GCCACTTGGGTTCTTCCAATTGCTGGCCCTCTTCTCATTGGTGCAGTCGCCAACAACTTT 643
Query 541 GTCATCAAGGGAGAATGCCCAGCATGTAAGAGGCAGTTCATAGGATACAAGAGCCAAATC 600
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 644 GTCATCAAGGGAGAATGCCCAGCATGTAAGAGGCAGTTTATAGGGTACAAGAACCAAATC 703
Query 601 ATCAGATGCGAGGGATGTGGGAACATAGTGTGGCAGCCACAAGGCGACTTCTTCTCAAAA 660
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 704 ATCAGATGTGAGGGATGTGGGAACATAGTGTGGCAACCACAAGGCGATTTCTTCTCAAAA 763
Query 661 GATGGCAACAACAATAACA------------GCAAGGGAAACTCTAAAAAGCCACCTAAG 708
|||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 764 GATGGCAACAACAACAACAACAATAATAATAGCAAGGGAAACTCTAAAAAGCCACCTAAG 823
Query 709 TCCCAAATCATTGATGTCGATTTTGAAGAGAAATGA 744
|||||||||||||||||||||||||| |||||||||
Sbjct 824 TCCCAAATCATTGATGTCGATTTTGAGGAGAAATGA 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5