BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg315557 Length=519 Score E Sequences producing significant alignments: (Bits) Value ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | c... 785 0.0 AT2G05935.1 | Symbols: | transposable element gene | chr2:2278... 313 1e-84 > ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | chrC:69910-71882 REVERSE LENGTH=591 Length=591 Score = 785 bits (425), Expect = 0.0 Identities = 487/513 (95%), Gaps = 19/513 (4%) Strand=Plus/Plus Query 26 CTTT-TCGAAAAAGATTAttttttttAGGCCAAGAGGTTGATACCGAAATCTCGAATCAA 84 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79 CTTTATCGAGAAAGATTATTTTTTTTAGGCCAAGAGGTTGATACCGAAATCTCGAATCAA 138 Query 85 CTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTT 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 139 CTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTT 198 Query 145 ATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTT 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 ATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTT 258 Query 205 GTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATC 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 259 GTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATC 318 Query 265 CTGGTCGGAGGAGCAATTACCAAACG-AT-G-----------G---G--TAATGATCCAT 306 || ||||||||||||||||||||||| || | | | ||||||||||| Sbjct 319 CTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCACGCTAGGGTAATGATCCAT 378 Query 307 CAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAA 366 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 379 CAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAA 438 Query 367 TTACTAAAACTTCGCGAAACCATGACAAGGGTTTATGTACAAAGAACGGGCAAACCTATA 426 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 439 TTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAAAGAACGGGCAAACCTATA 498 Query 427 TGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCT 486 |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 499 TGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCT 558 Query 487 CATGGAATTGTTGATCTTGTAGCGGTTCAATAA 519 ||||||||||||||||||||||||||||||||| Sbjct 559 CATGGAATTGTTGATCTTGTAGCGGTTCAATAA 591 Score = 63.9 bits (34), Expect = 1e-09 Identities = 34/34 (100%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 1 ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAA 34 |||||||||||||||||||||||||||||||||| Sbjct 1 ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAA 34 > AT2G05935.1 | Symbols: | transposable element gene | chr2:2278835-2282788 FORWARD LENGTH=3954 Length=3954 Score = 313 bits (169), Expect = 1e-84 Identities = 200/215 (93%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 293 GGGTAATGATCCATCAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTTATCT 352 |||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||| Sbjct 3736 GGGTAATGATCCATCAACCCGCTAATTTGTTTTATGAGGCACAAACAGGAGAATTTATCT 3795 Query 353 TGGAAGCGGAAGAATTACTAAAACTTCGCGAAACCATGACAAGGGTTTATGTACAAAGAA 412 |||||| |||||||||||||||||||||||||||||| |||||| ||||||||| ||||| Sbjct 3796 TGGAAGTGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGATTTATGTACGAAGAA 3855 Query 413 CGGGCAAACCTATATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAA 472 |||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||| ||| Sbjct 3856 CGGGCAAATCTATATGGGTTATATCCGAAGACATTGAACGGGATGTTTTTATGTCAACAA 3915 Query 473 CAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTA 507 |||| ||||||||||||||||||||| |||||||| Sbjct 3916 CAGA-GCCCAAGCTCATGGAATTGTTAATCTTGTA 3949 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24815668618 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5