BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315557

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | c...   785    0.0  
  AT2G05935.1 | Symbols:  | transposable element gene | chr2:2278...   313    1e-84


> ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | 
chrC:69910-71882 REVERSE LENGTH=591
Length=591

 Score =  785 bits (425),  Expect = 0.0
 Identities = 487/513 (95%), Gaps = 19/513 (4%)
 Strand=Plus/Plus

Query  26   CTTT-TCGAAAAAGATTAttttttttAGGCCAAGAGGTTGATACCGAAATCTCGAATCAA  84
            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  79   CTTTATCGAGAAAGATTATTTTTTTTAGGCCAAGAGGTTGATACCGAAATCTCGAATCAA  138

Query  85   CTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTT  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  139  CTTATTAGTCTTATGATATATCTCAGTATAGAAAAGGATACCAAAGATCTTTATTTGTTT  198

Query  145  ATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTT  204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  ATAAACTCTCCTGGTGGATGGGTAATATCTGGAATGGCTATTTATGATACTATGCAATTT  258

Query  205  GTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATC  264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  259  GTGCGACCCGATGTACAGACAATATGCATGGGATTGGCCGCTTCAATAGCATCCTTTATC  318

Query  265  CTGGTCGGAGGAGCAATTACCAAACG-AT-G-----------G---G--TAATGATCCAT  306
            || ||||||||||||||||||||||| || |           |   |  |||||||||||
Sbjct  319  CTAGTCGGAGGAGCAATTACCAAACGTATAGCATTCCCTCACGCTAGGGTAATGATCCAT  378

Query  307  CAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAA  366
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  379  CAACCCGCTAGTTCGTTTTATGAGGCACAAACGGGAGAATTTATCTTGGAAGCGGAAGAA  438

Query  367  TTACTAAAACTTCGCGAAACCATGACAAGGGTTTATGTACAAAGAACGGGCAAACCTATA  426
            ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  439  TTACTTAAACTTCGCGAAACCATCACAAGGGTTTATGTACAAAGAACGGGCAAACCTATA  498

Query  427  TGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCT  486
            |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  499  TGGGTTATATCCGAAGACATGGAACGGGATGTTTTTATGTCAGCAACAGAAGCCCAAGCT  558

Query  487  CATGGAATTGTTGATCTTGTAGCGGTTCAATAA  519
            |||||||||||||||||||||||||||||||||
Sbjct  559  CATGGAATTGTTGATCTTGTAGCGGTTCAATAA  591


 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  1   ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAA  34
           ||||||||||||||||||||||||||||||||||
Sbjct  1   ATGCCTATTGGCGTTCCAAAAGTACCTTTTCGAA  34


> AT2G05935.1 | Symbols:  | transposable element gene | chr2:2278835-2282788 
FORWARD LENGTH=3954
Length=3954

 Score =  313 bits (169),  Expect = 1e-84
 Identities = 200/215 (93%), Gaps = 1/215 (0%)
 Strand=Plus/Plus

Query  293   GGGTAATGATCCATCAACCCGCTAGCTCGTTTTATGAGGCACAAACGGGAGAATTTATCT  352
             ||||||||||||||||||||||||  | |||||||||||||||||| |||||||||||||
Sbjct  3736  GGGTAATGATCCATCAACCCGCTAATTTGTTTTATGAGGCACAAACAGGAGAATTTATCT  3795

Query  353   TGGAAGCGGAAGAATTACTAAAACTTCGCGAAACCATGACAAGGGTTTATGTACAAAGAA  412
             |||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |||||
Sbjct  3796  TGGAAGTGGAAGAATTACTAAAACTTCGCGAAACCATCACAAGGATTTATGTACGAAGAA  3855

Query  413   CGGGCAAACCTATATGGGTTGTATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAA  472
             |||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||| |||
Sbjct  3856  CGGGCAAATCTATATGGGTTATATCCGAAGACATTGAACGGGATGTTTTTATGTCAACAA  3915

Query  473   CAGAAGCCCAAGCTCATGGAATTGTTGATCTTGTA  507
             |||| ||||||||||||||||||||| ||||||||
Sbjct  3916  CAGA-GCCCAAGCTCATGGAATTGTTAATCTTGTA  3949



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5