BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg315565

Length=282
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:1...   516    5e-146
  ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1...   516    5e-146


> ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787 
FORWARD LENGTH=282
Length=282

 Score =  516 bits (279),  Expect = 5e-146
 Identities = 281/282 (99%), Gaps = 0/282 (0%)
 Strand=Plus/Plus

Query  1    ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT  60

Query  61   CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA  120

Query  121  CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA  180

Query  181  AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA  240

Query  241  CCGGGTTATTCTATTCCACCTCTTAGAAATAAAAGAACTTAA  282
            ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA  282


> ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1 
| chrC:85862-86143 REVERSE LENGTH=282
Length=282

 Score =  516 bits (279),  Expect = 5e-146
 Identities = 281/282 (99%), Gaps = 0/282 (0%)
 Strand=Plus/Plus

Query  1    ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT  60

Query  61   CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA  120

Query  121  CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA  180

Query  181  AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA  240

Query  241  CCGGGTTATTCTATTCCACCTCTTAGAAATAAAAGAACTTAA  282
            ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA  282



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12969079242


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5