BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg315565 Length=282 Score E Sequences producing significant alignments: (Bits) Value ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:1... 516 5e-146 ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1... 516 5e-146 > ATCG01300.1 | Symbols: RPL23.2 | ribosomal protein L23 | chrC:152506-152787 FORWARD LENGTH=282 Length=282 Score = 516 bits (279), Expect = 5e-146 Identities = 281/282 (99%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60 Query 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120 Query 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180 Query 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240 Query 241 CCGGGTTATTCTATTCCACCTCTTAGAAATAAAAGAACTTAA 282 ||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282 > ATCG00840.1 | Symbols: RPL23.1, RPL23 | ribosomal protein L23.1 | chrC:85862-86143 REVERSE LENGTH=282 Length=282 Score = 516 bits (279), Expect = 5e-146 Identities = 281/282 (99%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAAT 60 Query 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAATATACTTTTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAA 120 Query 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCCGGAAAGGTTAAA 180 Query 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AGAATGGGACCTATTCTGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAA 240 Query 241 CCGGGTTATTCTATTCCACCTCTTAGAAATAAAAGAACTTAA 282 ||||||||||||||||||||||||||||| |||||||||||| Sbjct 241 CCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAA 282 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12969079242 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5