BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315588
Length=1764
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |... 2926 0.0
AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family prot... 1934 0.0
> AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative
| chr5:20841245-20843806 FORWARD LENGTH=2148
Length=2148
Score = 2926 bits (1584), Expect = 0.0
Identities = 1708/1768 (97%), Gaps = 8/1768 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGACGAC-GATAGTTACGTTGAGTATGTTTCAGTGGCGGAGCGGAGAGCGATGGA 59
|||||||| | | ||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 224 ATGGAAGAAG-CTGATAGTTACATTGAGTATGTATCAGTGGCGGAGCGGAGAGCGATTGC 282
Query 60 AGCGCAGAAGATACTTCAACGGAAGGGAAAAGCTTCGGAATTGGAGGAAGAAGCTGACAA 119
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 283 AGCGCAGAAGATACTTCAGCGGAAGGGAAAAGCTTCGGAATTGGAAGAAGAAGCTGACAA 342
Query 120 GGAAAAGCTCGCTGAAGCTAAACCTAGTTTACTCGTTCAAGCAACTCAGCTCAAGCGAGA 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 343 GGAAAAGCTCGCTGAAGCTAAACCTAGTTTACTTGTTCAAGCAACTCAGCTCAAGCGAGA 402
Query 180 TGTTCCTC-AAGTTAGTGCTACTGAGCAAATCATCTTACAAGAGAAAGAGATGATGGAGC 238
||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TGTACC-CGAAGTTAGTGCTACTGAGCAAATCATCTTACAAGAGAAAGAGATGATGGAGC 461
Query 239 ATTTATCTGATAAGAAGACGCTTATGTCTGTTCGTGAA-TTGGCCAAAGGTATCACTTAT 297
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 462 ATTTATCTGATAAGAAGACGCTTATGTCTGTTCGTGAACTT-GCCAAAGGTATCACTTAT 520
Query 298 ACAGAGCCTCTCTTAACTGGGTGGAAACCTCCTTTGCATATTAGGAGGATGTCGAATAAG 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 521 ACAGAGCCTCTCTTAACTGGGTGGAAACCTCCTTTGCATATTAGGAAGATGTCTAGTAAG 580
Query 358 CAGAGAGATTTGATTAGGAAGCAATGGCATATTATTGTTAATGGTGATGATATTCCTCCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 CAGAGAGATTTGATTAGGAAGCAATGGCATATTATTGTTAATGGTGATGATATTCCTCCT 640
Query 418 CCTATCAAGAACTTTAAGGATATGAAGTTTCCTAGACCTGTTCTTGATACTCTTAAGGAG 477
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 641 CCTATTAAGAACTTTAAGGATATGAAGTTTCCTAGACCTGTTCTCGATACTCTCAAGGAG 700
Query 478 AAAGGAATTGTGCAGCCTACTCCTATTCAAGTTCAGGGTCTTCCTGTGATTTTGGCTGGG 537
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AAAGGTATTGTGCAGCCTACTCCTATTCAAGTTCAGGGTCTTCCTGTGATTTTGGCTGGG 760
Query 538 AGGGATATGATTGGGATTGCGTTT-ACTGGTTCTGGAAAGACTTTGGTTTTCGTGCTTCC 596
|| ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct 761 AGAGATATGATTGGGATTGC-TTTCACTGGTTCCGGAAAGACTTTGGTTTTCGTGCTTCC 819
Query 597 CATGATCATGATTGCTCTCCAAGAAGAGATGATGATGCCTATTGCTGCGGGAGAAGGTCC 656
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 820 CATGATCATGATTGCTCTCCAAGAAGAGATGATGATGCCTATTGCTGCTGGTGAAGGTCC 879
Query 657 CATTGGGCTTATTGTTTGCCCTTCTAGAGAGCTTGCTAGGCAGACTTATGAAGTGGTTGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 CATTGGGCTTATTGTTTGCCCTTCTAGAGAGCTTGCTAGGCAGACTTATGAAGTGGTTGA 939
Query 717 GCAGTTTGTGGCTCCTTTGGTCGAGGCTGGATACCCGCCATTGAGGTCGTTGCTATGTAT 776
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 940 GCAGTTTGTGGCTCCTTTGGTTGAGGCTGGGTACCCGCCATTGAGGTCGTTGCTATGTAT 999
Query 777 TGGTGGAATTGATATGAGATCCCAGTTGGAGGTTGTCAAGAGAGGTGTCCACATCGTTGT 836
||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1000 TGGAGGTATTGATATGAGATCCCAGTTGGAGGTTGTCAAGAGAGGTGTCCATATTGTTGT 1059
Query 837 TGCAACCCCTGGGAGGTTAAAGGATATGCTCGCCAAGAAAAAGATGAGCTTAGATGCTTG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 TGCAACCCCTGGGAGGTTAAAGGATATGCTCGCCAAGAAAAAGATGAGCTTAGATGCTTG 1119
Query 897 CAGGTACCTGACACTAGATGAGGCAGATAGGTTGGTTGATTTGGGTTTCGAAGATGACAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 CAGGTACCTGACACTAGATGAGGCAGATAGGTTGGTTGATTTGGGTTTCGAAGATGACAT 1179
Query 957 AAGGGAAGTCTTTGACCACTTTAAGTCTCAACGTCAAACACTTTTGTTTTCAGCCACAAT 1016
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 1180 AAGGGAAGTCTTTGACCACTTTAAGTCTCAACGTCAAACACTATTGTTCTCTGCCACAAT 1239
Query 1017 GCCCACAAAGATTCAAATCTTTGCCAGAAGTGCTCTGGTGAAACCTGTGACTGTTAATGT 1076
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1240 GCCCACAAAGATTCAAATCTTTGCCAGAAGTGCTCTGGTGAAACCTGTGACAGTTAATGT 1299
Query 1077 AGGAAGAGCTGGAGCTGCGAATCTCGATGTGATCCAGGAGGTAGAATACGTCAAACAAGA 1136
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1300 AGGAAGAGCTGGAGCTGCGAATCTGGATGTGATCCAGGAGGTAGAATACGTCAAACAAGA 1359
Query 1137 AGCAAAGATTGTTTACCTCCTCGAGTGTCTACAGAAAACATCTCCACCGGTTTTAATATT 1196
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1360 AGCAAAGATTGTTTACCTCCTCGAGTGTCTACAGAAAACCTCTCCGCCGGTTTTGATATT 1419
Query 1197 CTGTGAGAACAAAGCTGATGTTGATGATATTCACGAGTACTTGTTACTGAAAGGAGTGGA 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CTGTGAGAACAAAGCTGATGTTGATGATATTCACGAGTACTTGTTACTGAAAGGAGTGGA 1479
Query 1257 AGCAGTGGCCATCCATGGAGGGAAAGATCAAGAAGACAGAGAGTACGCAATCTCTTCGTT 1316
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1480 AGCAGTGGCCATCCATGGAGGAAAAGATCAAGAAGACAGAGAGTACGCAATCTCTTCGTT 1539
Query 1317 TAAAGCTGGGAAAAAAGATGTGTTGGTCGCGACTGATGTTGCTTCAAAGGGTCTAGATTT 1376
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1540 TAAAGCTGGGAAAAAAGATGTGTTGGTTGCGACTGATGTTGCTTCAAAGGGTCTAGATTT 1599
Query 1377 CCCTGATATACAACACGTAATCAACTACGACATGCCAGCAGAGATTGAGAACTATGTGCA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 CCCTGATATACAACACGTAATCAACTACGACATGCCAGCAGAGATTGAGAACTATGTGCA 1659
Query 1437 TAGGATAGGACGAACAGGTCGGTGTGGGAAAACTGGGATAGCAACTACATTTATAAACAA 1496
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1660 TAGGATAGGACGAACAGGTCGGTGTGGTAAAACTGGGATAGCAACGACGTTTATAAACAA 1719
Query 1497 GAATCAAAGTGAAACCACGCTGCTCGATTTGAAACACTTGTTGCAAGAAGCTAAACAGAG 1556
||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1720 GAATCAAAGCGAAACCACTCTGCTGGATTTGAAACACTTGTTGCAAGAAGCTAAACAGAG 1779
Query 1557 GATTCCACCTGTCCTTGCTGAACTGAATGATCCAATGGAAGAAGCAGAGACCATTGCGAA 1616
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1780 GATTCCACCTGTCCTTGCTGAGCTGAATGATCCAATGGAAGAAGCAGAGACCATTGCTAA 1839
Query 1617 TGCAAGTGGTGTCAAGGGTTGTGCGTATTGTGGTGGTCTTGGACATCGTATTCGAGACTG 1676
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1840 TGCAAGTGGTGTCAAGGGTTGTGCCTATTGTGGTGGTCTTGGACATCGTATCCGAGACTG 1899
Query 1677 TCCAAAACTTGAGCACCAGAAGAGTGTGGCCATATCTAACTCTAGAAAAGACTATTTTGG 1736
||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 1900 TCCAAAACTTGAGCACCAGAAGAGTGTCGCCATTTCTAACTCAAGAAAAGATTATTTTGG 1959
Query 1737 CTCTGGTGGCTATAGAGGAGAAATATAA 1764
||| |||||||| |||||||||||||||
Sbjct 1960 CTCGGGTGGCTACAGAGGAGAAATATAA 1987
> AT4G33370.1 | Symbols: | DEA(D/H)-box RNA helicase family protein
| chr4:16069669-16071405 REVERSE LENGTH=1629
Length=1629
Score = 1934 bits (1047), Expect = 0.0
Identities = 1378/1539 (90%), Gaps = 18/1539 (1%)
Strand=Plus/Plus
Query 228 GATGATGGAGCATTTATCTGATAAGAAGACGCTTATGTCTGTTCGTGAATTGGCCAAAGG 287
||||||||||||||||||||| ||||||| ||||||||||||| ||||||| |||| |||
Sbjct 93 GATGATGGAGCATTTATCTGACAAGAAGAAGCTTATGTCTGTTGGTGAATTAGCCAGAGG 152
Query 288 TATCACTTATACAGAGCCTCTCTTAAC-TGGGTGGAAACCTCCTTTGCATATTAGGAGGA 346
||||||||||||||||||||||| ||| | |||||||||| ||| |||| |||||| ||
Sbjct 153 TATCACTTATACAGAGCCTCTCTCAACAT-GGTGGAAACCCCCTCTGCACGTTAGGAAGA 211
Query 347 TGTCGAA-TAAGCAGA-GAGATTTGATTAGGAAGCAATGGCATATTATTGTTAATGGTGA 404
|||| || || |||| | |||||||||||||||||||||||||||| ||||| |||||
Sbjct 212 TGTC-AACCAAACAGATG-GATTTGATTAGGAAGCAATGGCATATTACAGTTAACGGTGA 269
Query 405 TGATATTCCTCCTCCTATCAAGAACTTTAAGGATATGAAGTTTCCTAGACCTGTTCT-TG 463
|||||||||||||| ||||| ||||| | ||||||||| ||||| || || |||| |
Sbjct 270 AGATATTCCTCCTCCAATCAAAAACTTCATGGATATGAAATTTCCGAGTCCACTTCTCCG 329
Query 464 ATACT-CTTAAGGAGAAAGGAATTGTGCAGCCTACTCCTATTCAAGTTCAGGGTCTTCCT 522
|| | || ||||| |||||||| |||| ||||||||||| ||||||||||||||||||
Sbjct 330 -TA-TGCTCAAGGATAAAGGAATAATGCACCCTACTCCTATCCAAGTTCAGGGTCTTCCT 387
Query 523 G-TGATTTTGGCTGGGAGGGATATGATTGGGATTGCGTTTACTGGTTCTGGAAAGACTTT 581
| || ||||| |||| || |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 388 GTTG-TTTTGTCTGGCAGAGATATGATTGGGATTGCGTTCACTGGTTCCGGAAAGACGTT 446
Query 582 GGTTTTCGTGCTTCCCATGATCATGATT-GCTCTCCAAGAAGAGATGATGATGCCTATTG 640
||||||||||||||| |||||||| ||| ||||| || || ||||| ||||||||||| |
Sbjct 447 GGTTTTCGTGCTTCCTATGATCAT-ATTAGCTCTGCAGGAGGAGATAATGATGCCTATAG 505
Query 641 CTGCGGGAGAAGGTCCCATTGGGCTTATTGTTTGCCCTTCTAGAGAGCTTGCTAGGCAGA 700
|||| |||||||||||||||| |||| || |||| || |||||||||||||||| |||||
Sbjct 506 CTGCTGGAGAAGGTCCCATTGCGCTTGTTATTTGTCCGTCTAGAGAGCTTGCTAAGCAGA 565
Query 701 CTTATGAAGTGGTTGAGCAGTTTGTGGC-TCCTTTGGTCGAGGCTGGATACCCGCCATTG 759
|||| || |||||||| ||||||||||| | |||| ||||||| ||||||||||| |||
Sbjct 566 CTTACGATGTGGTTGAACAGTTTGTGGCAT-CTTTAGTCGAGGATGGATACCCGCGGTTG 624
Query 760 AGGTCGTTGCTATGTATTGGTGGAATTGATATGAGATCCCAGTTGGAGGTTGTCAAGAGA 819
|||||||||||||| ||||| ||| | ||||||||||| |||||||| ||||| |||| |
Sbjct 625 AGGTCGTTGCTATGCATTGGAGGAGTGGATATGAGATCACAGTTGGACGTTGTTAAGAAA 684
Query 820 GGTGTCCACATCGTTGTTGCAACCCCTGGGAGGTTAAAGGATATGCTCGCCAAGAAAAAG 879
||||| |||||||||||||| || ||||| ||||| |||||||| |||||||||||||||
Sbjct 685 GGTGTTCACATCGTTGTTGCTACTCCTGGAAGGTTGAAGGATATCCTCGCCAAGAAAAAG 744
Query 880 ATGAGCTTAGATGCTTGCAGGTACCTGACACTAGATGAGGCAGATAGGTTGGTTGATTTG 939
|||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct 745 ATGAGCTTAGATGCTTGCAGGTTGTTGACACTGGATGAAGCAGATAGGTTGGTTGATTTG 804
Query 940 GGTTTCGAAGATGACATAAGGGAAGTCTTTGACCACTTTAAGTCTCAACGTCAAACACTT 999
|||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 805 GGTTTCGAAGATGACATAAGACATGTCTTTGACCACTTTAAGTCTCAGCGTCAAACACTT 864
Query 1000 TTGTTTTCAGCCACAATGCCCACAAAGATTCAAATCTTTGCCAGAAGTGCTCTGGTGAAA 1059
|||||||| ||||||||||| |||| || ||||||||||||| ||||||||||||||||
Sbjct 865 TTGTTTTCTGCCACAATGCCTGCAAAAATCCAAATCTTTGCCACAAGTGCTCTGGTGAAA 924
Query 1060 CCTGTGACTGTTAATGTAGGAAGAGCTGGAGCTGCGAATCTCGATGTGATCCAGGAGGTA 1119
||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 925 CCTGTAACTGTTAATGTAGGAAGAGCTGGAGCTGCGAATCTCGATGTCATACAGGAGGTT 984
Query 1120 GAATACGTCAAACAAGAAGCAAAGATTGTTTACCTCCTCGAGTGTCTACAGAAAA-CATC 1178
||||||||||| ||||||||||||||||||||||| || |||||||| ||||||| || |
Sbjct 985 GAATACGTCAAGCAAGAAGCAAAGATTGTTTACCTTCTGGAGTGTCTGCAGAAAACCA-C 1043
Query 1179 TCCACCGGTTTTAATATTCTGTGAGAACAAAGCTGATGTTGATGATATTCACGAGTACTT 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 TCCACCGGTTTTAATATTCTGTGAGAACAAAGCTGATGTTGATGATATTCACGAGTACTT 1103
Query 1239 GTTACTGAAAGGAGTGGAAGCAGTGGCCATCCATGGAGGGAAAGATCAAGAAGACAGAGA 1298
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1104 GTTACTGAAAGGAGTGGAAGCAGTGGCTATCCATGGAGGAAAAGATCAAGAAGACAGAGA 1163
Query 1299 GTACGCAATCTCTTCGTTTAAAGCTGGGAAAAAAGATGTGTTGGTCGCGACTGATGTTGC 1358
|||||||| |||| ||| ||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1164 TTACGCAATATCTTTGTTCAAAGCTGGGAAAAAAGACGTTTTGGTCGCGACCGATGTTGC 1223
Query 1359 TTCAAAGGGTCTAGATTTCCCTGATATACAACACGTAATCAACTACGACATGCCAGCAGA 1418
|||||||||| |||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 1224 TTCAAAGGGTTTAGATTTCCCTGATATACAACATGTAATCAACTACGACATGCCTGGGGA 1283
Query 1419 GATTGAGAACTATGTGCATAGGATAGGACGAACAGGTCGGTGTGGGAAAACTGGGATAGC 1478
|||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1284 GATTGAGAACTACGTGCATAGGATAGGAAGAACAGGTCGCTGTGGGAAAACTGGGATAGC 1343
Query 1479 AACTACATTTATAAACAAGAATCAAAGTGAAACCACGCTGCTCGATTTGAAACACTTGTT 1538
|||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 1344 AACTACGTTTATAAACAAGAACCAAAGCGAAATCACGCTGCTCGATTTGAAACACTTGTT 1403
Query 1539 GCAAGAAGCTAAACAGAGGATTCCACCTGTCCTTGCTGAACTGAATGATCCAATGGAAGA 1598
||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct 1404 GCAAGAAGCTAAACAGAGGATTCCACCTGTCCTTGCTGAGCTTAATGGTCCAATGGAAGA 1463
Query 1599 AGCAGAGACCATTGCGAATGCAAGTGGTGTCAAGGGTTGTGCGTATTGTGGTGGTCTTGG 1658
| |||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1464 AACAGAAACCATTGCTAATGCAAGCGGTGTCAAGGGTTGTGCTTATTGTGGTGGTCTCGG 1523
Query 1659 ACATCGTATTCGAGACTGTCCAAAACTTGAGCACCAGAAGAGTGTGGCCATATCTAACTC 1718
||||| |||| | | ||||||||| |||| || ||||||||||| || ||||||| ||
Sbjct 1524 GCATCGGATTCTACAGTGTCCAAAATTTGAACATCAGAAGAGTGTAGCTATATCTAGTTC 1583
Query 1719 TAGAAAAGACTATTTTGGCTCTGGTGGCTATAGAGGAGA 1757
||| |||||| |||||||||||| ||| || ||||||||
Sbjct 1584 TAGGAAAGACCATTTTGGCTCTGATGGATACAGAGGAGA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87248547210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5