BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg315784
Length=2958
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67690.1 | Symbols: | Zincin-like metalloproteases family p... 2433 0.0
AT1G67700.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 726 0.0
> AT1G67690.1 | Symbols: | Zincin-like metalloproteases family
protein | chr1:25369086-25373730 FORWARD LENGTH=2133
Length=2133
Score = 2433 bits (1317), Expect = 0.0
Identities = 1416/1464 (97%), Gaps = 6/1464 (0%)
Strand=Plus/Plus
Query 88 GGTCTTCCTGGTTGTGATACTGTTTGTGTGAACCTATCTGCGAAGGAGATTCTCGATTTA 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 GGTCTTCCTGGTTGTGATACTGTTTGTGTGAACCTATCTGCGAAGGAGATTCTCGATTTA 219
Query 148 GCTGACGAAATTATTCACAAGTCTACACGAGTTCATGATGCTGTTGCTTTGGTTTCTCTA 207
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GCTGAAGAAATTATTCACAAGTCTACACGAGTTCATGATGCTGTTGCTTTGGTTTCTCTA 279
Query 208 GATAAGCTCTCTTATGAGAATGTTGTATTGCCGTTGGCTGAATTGGAAGCTAGACAACTC 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GATAAGCTCTCTTATGAGAATGTTGTATTGCCGTTGGCTGAATTGGAAGCTAGACAACTC 339
Query 268 TCGCTTATACAATGTTGTGTGTTTCCTAAGATGTTATCGCCTCACGATAATGTTCGTAAA 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TCGCTTATACAATGTTGTGTGTTTCCTAAGATGTTATCGCCTCACGATAATGTTCGTAAA 399
Query 328 GCTAGTGCTGAAGCTGAGCAGAAAATCGACGCTCATATTCTCTCCTGCAGAAAACGTGAA 387
|||||| | ||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 400 GCTAGTACAGAAGCGGAGCAGAAAATCGACGCTCATATACTTTCCTGCAGAAAACGTGAA 459
Query 388 GATGTTTACCGGATTATCAAAATTTATGCTGCAAAGGGAGAATCGATTGCTCCTGAAGCT 447
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 460 GATGTTTACCGGATTATCAAAATTTATGCTGCAAAGGGAGAATCGATTTCTCCGGAAGCT 519
Query 448 AAATGCTACCTACAGTGTCTGGTTAGAGACTTTGAGGACAATGGTCTGAACCTTACTGCA 507
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 AAATGTTACCTACAGTGTCTGGTTAGAGACTTTGAGGACAATGGTCTGAACCTTACTGCA 579
Query 508 ATAAAAAGAGAGGAAGTTGAGAGACTAACAA-ATGAAATTGATGAGCTTAGCTTGCGATA 566
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 580 ATAAAAAGAGAGGAAGTTGAGAGACTAA-AATATGAAATTGATGAGCTTAGCTTGCGATA 638
Query 567 CATTCGGAATTTAAATGAAGATAGTTCTTGTCTCTTTTTTACTGAGGATGAGCTTGCTGG 626
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CATTCAGAATTTAAATGAAGATAGTTCTTGTCTCTTTTTTACTGAGGATGAGCTTGCTGG 698
Query 627 TTTGCCTCTAGAATTTCTTCAGAGTTTGGAAAAAACTCAAAATAAAGAATTTAAGCTCAC 686
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 699 TTTGCCTCTAGAATTTCTTCAGAATTTAGAAAAAACTCAAAATAAAGAATTTAAGCTCAC 758
Query 687 CTTGGGAAGTCGTAACGTCGCAGCTATTCTAGAGTTGTGTAAGATAGCCAAGACAAGGAA 746
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 759 CTTGGAAAGTCGTCACGTCGCAGCTATTCTAGAGTTGTGCAAGATAGCCAAGACAAGGAA 818
Query 747 GACGGTAGCTATGGCATATGGAAAGAGATGTGGAGATACCAATATTCCGGTGTTACAAAG 806
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 819 GACGGTGGCTATGGCATATGGAAAGAGATGTGGAGATACCAATATTCCTGTGTTACAAAG 878
Query 807 ATTGGTTCATTCACGCCATAGATTAGC-TCGCGTCCT-TGGTTATTCACATTTCGCAGAT 864
||||||||| ||||||||||||||||| | |||| | ||||||| |||| |||||||||
Sbjct 879 ATTGGTTCAGTCACGCCATAGATTAGCAT-GCGTA-TGTGGTTATGCACACTTCGCAGAT 936
Query 865 TATGCTCTTGATCGCAGAATGTCGAAGACATCAATGAGGGTGATTAGGTTCCTGGAGGAC 924
|||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 937 TATGCTCTTGATCGTAGGATGTCAAAGACATCAATGAGGGTGATCAGGTTCCTGGAGGAC 996
Query 925 ATCTCTTCCAGTTTAACTGACTTGGCTATTAGAGAGTTTTCCATTTTGAAAGACTTGAAG 984
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 997 ATTTCTTCCAGTTTAACTGACTTGGCTATTAGAGAGTTTTCCATTTTGGAAGACTTGAAG 1056
Query 985 AGGAAAGAAGAAGGGGAAATTCCATTTGGCGTAGAAGATCTTTTATATTACATAAAGAGG 1044
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1057 AGGAAAGAAGAAGGGGAGATTCCATTTGGCGTAGAAGATCTTTTATACTACATAAAGAGG 1116
Query 1045 GTAGAGGAGTTGCAGTTTGATCTTGATTTTGGAGATATCCGGCAATATTTTCCTGTCAGT 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GTAGAGGAGTTGCAGTTTGATCTTGATTTTGGAGATATCCGGCAATATTTTCCTGTCAAC 1176
Query 1105 TTGGTCCTTTCCGGGATATTTAAAATATGTCAGGACCTTTTTGGAATAAAAATTGAGGAG 1164
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1177 TTGGTCCTTTCCGGGATCTTTAAAATATGTCAGGACCTTTTTGGAATAAAATTTGAGGAG 1236
Query 1165 GTTACAGAAGTTGATGTCTGGTATCATGATGTTCGAGCTTTTGCCGTCTTTGACTCCGGA 1224
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 1237 GTTACAGAAGTTGATGTCTGGTATCATGATATTCGAGCTTTTGCCGTCTTTGACTCAGGA 1296
Query 1225 TCTGGAAAGCTTTTGGGATATTTCTATCTTGACATGTTTACAAGGGAAGGAAAATGTAAT 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TCTGGAAAGCTTTTGGGATATTTCTATCTTGACATGTTTACAAGGGAAGGAAAATGTAAT 1356
Query 1285 CACAGCTGTGTGATGGCTCTTCAGAATAACGCACTGTTCTCCAATGGTGCATGTCAGATT 1344
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CACAGCTGTGTGGTGGCTCTTCAGAATAACGCACTGTTCTCCAATGGTGCATGTCAGATT 1416
Query 1345 CCTGTGGCGTTGCTTATTGCACAGTTTGCAAAGGATGGTAGTGGTGAATCTGTGCCATTG 1404
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1417 CCTGTGGCGTTGCTTATTGCACAGTTTGCAAAGGATGGTAGTGGTGAAGCTGTGCCATTG 1476
Query 1405 GGATTCTCTGAGGTGGTTAATCTTTTTCATGAGTTTGGCCATGTGGTCCAACATATCTGC 1464
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GGATTTTCTGACGTGGTTAATCTTTTTCATGAGTTTGGCCATGTGGTCCAACATATCTGC 1536
Query 1465 AATCGTGCTTCATTTGCTAGATTCTCAGGCCTACGTGTTGACCCTGACTTTCGGGAGATC 1524
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1537 AATCGTGCTTCATTTGCTAGATTCTCGGGCCTACGTGTTGACCCCGACTTTCGGGAGATT 1596
Query 1525 CCTTCTCAGTTATTGGAAAACTGG 1548
||||||||||||||||||||||||
Sbjct 1597 CCTTCTCAGTTATTGGAAAACTGG 1620
Score = 795 bits (430), Expect = 0.0
Identities = 448/457 (98%), Gaps = 0/457 (0%)
Strand=Plus/Plus
Query 1552 GATATTACCAAGCCACTTGTGGATGAAGTCTGCAAAACACTCAAACGTTGGCGATATTCT 1611
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1666 GATATCACCAAGCCACTTGTGGATGAAGTCTGCAAAACACTCAAACGTTGGCGATATTCT 1725
Query 1612 TTCTCTGCACTAAAGTCGCTTCAGGAGATATTATACTGTCTATTTGATCAAATAATATAT 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 TTCTCTGCACTAAAGTCGCTTCAGGAGATATTATACTGTCTATTTGATCAAATAATATAT 1785
Query 1672 TCGGACGATGACGCTGACTTACTGCAGCTAATCAGGAGTCTTCACCCAAAGGTAATGATA 1731
||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1786 TCGGACGATGATGCTGACTTACTCCAGCTAATCAGGAGTCTTCATCCAAAGGTAATGATA 1845
Query 1732 GGGCTACCAGTGGTGGAAGGAACCAACCCTGCTTCATGTTTCCCACGTGCTGTAATTGGC 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1846 GGGCTACCAGTGGTGGAAGGAACCAACCCTGCTTCATGTTTCCCACGTGCTGTAATTGGC 1905
Query 1792 TCCGAAGCAACATGTTACAGTCGTTTATGGAGTGAGGTGTATGCTGCTGATATATTTGCC 1851
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 TCTGAAGCAACATGTTACAGTCGTTTATGGAGTGAGGTGTATGCTGCTGATATATTTGCT 1965
Query 1852 TCAAAATTTGGGGATGGGCATCCGAATCTGTATGCCGGCTTGCAGTTCAGAGACAAAGTG 1911
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1966 TCAAAATTTGGAGATGGGCATCCGAATCTATATGCCGGCTTGCAGTTCAGAGACAAAGTG 2025
Query 1912 TTGGCCCCAGGAGGAGGCAAAGAACCAATGGAACTTCTCACCAATTTTCTTGGAAGGGAA 1971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2026 TTGGCCCCAGGAGGAGGCAAAGAACCAATGGAACTTCTCACCAATTTTCTTGGAAGGGAA 2085
Query 1972 CCATCAACACAAGCTTTCATCGATAGCCGGACAAACT 2008
|||||||||||||||||||||| ||||||||||||||
Sbjct 2086 CCATCAACACAAGCTTTCATCGCTAGCCGGACAAACT 2122
Score = 167 bits (90), Expect = 6e-40
Identities = 90/90 (100%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1 ATGACGGAAAACGAAGGAAACGACAAGAAAATCGAAGGATCTAATCCTAAGAAGAAGCTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGGAAAACGAAGGAAACGACAAGAAAATCGAAGGATCTAATCCTAAGAAGAAGCTC 60
Query 61 AACGTTGTAACCTTCACCGGAGCGGCGGGT 90
||||||||||||||||||||||||||||||
Sbjct 61 AACGTTGTAACCTTCACCGGAGCGGCGGGT 90
> AT1G67700.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 49 Blast hits to 49 proteins in 20 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr1:25374230-25376034
FORWARD LENGTH=985
Length=985
Score = 726 bits (393), Expect = 0.0
Identities = 401/405 (99%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 2060 TGAGTATGTCTTTGAACGCGTTAACTCGGCTTCCTCTGAAGAACACAGGAAGATTCGAAG 2119
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 TGAGTATGTCTTTGAATGCGTTAACTCGGCTTCCTCTGAAGAACACAGGAAGATTCGAAG 132
Query 2120 AGGTTGGGTTAGCGAGACACTCTCTGTTTAGCTCAAGAACGGCATGCCGAGAGACGGCGG 2179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 AGGTTGGTTTAGCGAGACACTCTCTGTTTAGCTCAAGAACGGCATGCCGAGAGACGGCGG 192
Query 2180 TGCAGCAGCGGCGGATGGTTTTTGTGGTGGAGGCTAAGGGAAAGAAAGGTATGGCGGCGC 2239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 TACAGCAGCGGCGGATGGTTTTTGTGGTGGAGGCTAAGGGAAAGAAAGGTATGGCGGCGC 252
Query 2240 GTCAGTATCAACGTACACCTCCTCCTATGCCTAAGATTGAAGACGATGGAAACCCAAGAT 2299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GTCAGTATCAACGTACACCTCCTCCTATGCCTAAGATTGAAGACGATGGAAACCCAAGAT 312
Query 2300 TCGTTATCTTCATTCGTATGGCCAATGTGTATCTTTGGTATCCTCTGAGTATAATAGCTG 2359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TCGTTATCTTCATTCGTATGGCCAATGTGTATCTTTGGTATCCTCTGAGTATAATAGCTG 372
Query 2360 GTGGTACTACTGCTAAGATCATGGTTGCTGCAAAAGATAACCTTTTGGGGAAGTATATCT 2419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 373 GTGGTACTACTGCTAAGATCATGGTTGCTGCAAAAGATAACCTCTTGGGGAAGTATATCT 432
Query 2420 ACAAAGACACCATTGCAAGAAACATTGCCGCTGTTATTTACAGAG 2464
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 ACAAAGACACCATTGCAAGAAACATTGCCGCTGTTATTTACAGAG 477
Score = 287 bits (155), Expect = 5e-76
Identities = 179/191 (94%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 2563 GAAAACGGAAACATGAGAGCTGCACTTAGTACCTCAGATGTTATCGAGCTCCCTACCCAG 2622
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 564 GAAAACGGAAACATGAGAGCTGCACTTAGTACTTCAGATGTTATTGAGCTCCCAACCCAG 623
Query 2623 GACCAGCTTAAAACAGTGTTCGACAAAGTTAAAGACTATTTTGGGGATGCAAAAGAGTCA 2682
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 624 GACCAGCTTAAAACAGTGTTCGACAAAGTTAAAGACTACTTTGGGGATGCAAAAGAGTCA 683
Query 2683 TTTGGAAAGCTAACATCGCTGAATCCTGGGACTGACCAAAAAACTGAAGAAACCCCCGAT 2742
|| ||||||||| |||||||||| || |||| |||| ||||||||||||||||| | |||
Sbjct 684 TTCGGAAAGCTATCATCGCTGAACCCGGGGAGTGACGAAAAAACTGAAGAAACCTCGGAT 743
Query 2743 GAGAAAGCCAA 2753
|||||||||||
Sbjct 744 GAGAAAGCCAA 754
Score = 137 bits (74), Expect = 5e-31
Identities = 76/77 (99%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 2801 GGCCTGAGGCTGAACAATTGTCACTTGGTTGGTTGATTTTGATGTCTCAACCGTCTCGGT 2860
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 755 GGCCTGAGGCTGAACAATTGACACTTGGTTGGTTGATTTTGATGTCTCAACCGTCTCGGT 814
Query 2861 ATGGGCTGCAGAAGGTC 2877
|||||||||||||||||
Sbjct 815 ATGGGCTGCAGAAGGTC 831
Score = 87.9 bits (47), Expect = 5e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 2514 GATGAGAAAGAGATTCAAAAGACAGCAATTAAGCAGCACCGTGTCTTGCG 2563
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 477 GATGAGAAAGAGATTCAAAAGACAGCAATTAAGCAGCATCGTGTCTTGCG 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 147039309933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5