BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg316086

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G71000.1 | Symbols:  | Chaperone DnaJ-domain superfamily pro...   396    1e-109


> AT1G71000.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein 
| chr1:26769336-26770111 REVERSE LENGTH=498
Length=498

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 240/253 (95%), Gaps = 0/253 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAGGTGGCATTAAGCAAACGTATTACGAGATTCTCGGTGTTGCCGTTGATTCTTCG  60
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAGGTGGCATTAGGCAAACGTATTACGAGATTCTCGGTGTTGCCGTTGATTCTTCG  60

Query  61   GCGGAGCAGATACGACGTGCATATCACAAGCTTGCTATGAGATGGCATCCTGACCGGTGG  120
            ||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||
Sbjct  61   GCGGAGCAGATACGACGAGCATATCACAAGCTTGCTAAGATATGGCATCCTGACCGGTGG  120

Query  121  ACAAAAGATCCTTTTAGGTCTGGTGAAGCTAAACGAAGATTTCAGCAAATTCAAGAAGCT  180
            || |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct  121  ACGAAAGATCCTTTTAGATCTGGAGAAGCTAAACGAAGATTCCAGCAGATTCAAGAAGCT  180

Query  181  TATTCAGTTTTGTCGGATGAGAGGAAACGAAGCTTGTACGATGTTGGACTGTATGATTCT  240
            |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||
Sbjct  181  TATTCAGTTTTGTCGGATGAGAGGAAACGAAGCTCGTACGACGTTGGACTCTATGATTCT  240

Query  241  GGTGAAGATGAGG  253
            || ||||||||||
Sbjct  241  GGAGAAGATGAGG  253


 Score =  296 bits (160),  Expect = 1e-79
 Identities = 185/197 (94%), Gaps = 1/197 (1%)
 Strand=Plus/Plus

Query  245  AAGATGAGGAAAAGCAGTACAGCTTGGATGAGTTGCAGACAATGGTCGATGACATGGTCT  304
            |||| ||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||
Sbjct  303  AAGA-GAGGAAAAGCAATACAGCTTGGAAGAGCTACAGACAATGGTCGATGACATGGTCT  361

Query  305  ATGAGTTCCAATCAGAACCATTGTTCCAGAACCAATCAATTCAAATGAATTTCGACTTGA  364
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  362  ATGAGTTCCAATCAGAACCATTGTTCCAGAACCAATCAATGCAAATGAATTTCGACTTGA  421

Query  365  ACCAACCGCCTGATTGGCATTCACAGATGTCTCTGCCGCTTTCAAGCTTTGAGTTCTATC  424
            ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  422  ACCAAACGCCTGATTGGCATTCACAGATGTCTCTACCGCTTTCAAGCTTTGAGTTCTATT  481

Query  425  CGCAGAGTAGCTACTGA  441
            | || || |||||||||
Sbjct  482  CTCAAAGCAGCTACTGA  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5