BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316182
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT1G72130.1 | Symbols: | Major facilitator superfamily protein... 2318 0.0
AT1G72131.1 | Symbols: | pseudogene of proton-dependent oligop... 821 0.0
> AT1G72130.1 | Symbols: | Major facilitator superfamily protein
| chr1:27137181-27139384 FORWARD LENGTH=1798
Length=1798
Score = 2318 bits (1255), Expect = 0.0
Identities = 1505/1624 (93%), Gaps = 23/1624 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATCACCCGTTCCTCCGCCAATGAGCTCGGAAATACCACTGAGGGTTTTCTCGAA 60
||||| |||||| ||||||||| | ||||||||||| ||||||||||||||||| |||
Sbjct 21 ATGGCTATCACCTACTCCTCCGCCGACGAGCTCGGAAACACCACTGAGGGTTTTCTGGAA 80
Query 61 ATCCGAGAAAATACCTCCGGTGGATGGAAATCCGCGAGGCTCATCATCGGTGTAGAAATG 120
|||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct 81 ATCCGAGAAAATACCTCCGGTGGATGGAAATCAGCGAGGCTCATCATCGTTGTACAAATG 140
Query 121 GCGGAGCGATTTGCTTACTTTGGCATAGCGTCAAACCTAATAATGTACCTGACAGGACCA 180
||||||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 141 GCGGAGCGATTCGCTTACTTTGGTATAGCGTCAAACCTAATAATGTACTTGACGGGACCG 200
Query 181 TTAGGTGAGTCAACAGCTGTC-GCGGCAGCGAATGTCAATGCTTGGGTTGGAACAGTGTC 239
||||||||||||||||||| | |||||||||||||||||||||||| |||||| ||| |
Sbjct 201 TTAGGTGAGTCAACAGCTG-CAGCGGCAGCGAATGTCAATGCTTGGACTGGAACGGTGGC 259
Query 240 GTTTCTGCCGCTTCTCGGGGGCTTTGTCGCTGACTCGTTTCTCGGTCGTTTCCGTACTAT 299
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 260 GTTTCTGCCGCTTCTCGGGGGCTTTCTCGCTGACTCGTATCTCGGTCGTTTCCGTACTAT 319
Query 300 CGCCATCTCATCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCCTTTTCAACCATGAT 359
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 320 AATCATCTCATCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCTTTTTCAACCATGAT 379
Query 360 TCCTTCTCA-CCG--CAAAGATTCGAATCAGCTCCAAGTGACTCTCTTCTTCTGCTCTCT 416
||||||||| | | |||||||||||||||||| |||| |||| ||||||||| ||||||
Sbjct 380 TCCTTCTCATCAGTCCAAAGATTCGAATCAGCTGCAAGAGACTATCTTCTTCTTCTCTCT 439
Query 417 GTATCTTGTAGCAATAGGACAAGGCGGTTACAAACCGTGTATCAAGGTATTTGGAGCTGA 476
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 440 TTATCTTGTAGCAATAGGACAAGGCGGTTACAACCCGTGTATTAAGGTATTTGGAGCGGA 499
Query 477 TCAATTCGATGGAAATGATCTA-AAAGAGGCAAAAGACAAGAGTTCTTTCTTCAACTGGT 535
|||||||||||||||||||| | |||||||||| |||||||||||| |||||||||||||
Sbjct 500 TCAATTCGATGGAAATGATC-ATAAAGAGGCAAGAGACAAGAGTTCATTCTTCAACTGGT 558
Query 536 TGATGTTTGGAAACTGTATTAGCATCTTGACGACTCGTTTAGTCTCTACCTATATTCAAG 595
||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 559 TGATGTTTGGAAACTGTATTAGCATATTGACGACTCGTTTGGTCTCTACCTACATTCAAG 618
Query 596 AGAACCTAAGCTGGTCACTAGGATTTGGTATTCCAAGTGTTTCCATGTTGCTTGCTCTGT 655
|||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||
Sbjct 619 AGAACCTAAGCTGGTCACTAGGGTTTGGTATTCCTAGTGTTTCCATGTTGCTTTCTCTGT 678
Query 656 TTCTCTTCCTCCTTGGAACTAACTCTTACCGTTTTAGTACTGAGAGAGAAGGAAAGAAAA 715
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 679 TTCTCTTCCTCCTTGGAACTACCTCTTACCGTTTTAGTACTGAGAGAGTAGGAAAGAAAA 738
Query 716 ACCCTTTTGCGAGAATCAGTCGTGTTTTCATGGAGGCTTTAAAGAACCA-AAGACAACCC 774
|||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 739 ACCCTTTTGCCAGAATCAGTCGTGTATTCATGGAGGCTTTAAAGAA-CAGAAGACAACCC 797
Query 775 GATTTAGATA-----AA-GCTAACGCGAACGAGACTCTCCTTCTCCTGGCTCACCAGAGT 828
|||||||||| || || ||||| |||||||||||||||||||||||||||||||||
Sbjct 798 GATTTAGATATTGCTAACGCGAACGCCAACGAGACTCTCCTTCTCCTGGCTCACCAGAGT 857
Query 829 TCCAAACAGTTCAGATTCCTAGACAGGGCAGCTATTTCATGTGAATTGGCTGAAATTGAA 888
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 858 TCCAAACAGTTCAGATTCCTAGACAGGGCAGCTATTTCTTGTGAATTGGCTGAAATTGAA 917
Query 889 GAAGCAAAGGCGGTTCTTAGGCTTATTCCCATATGGATAACTTGC-GTAGTTTACACCAT 947
||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||
Sbjct 918 GAAGCAAAGGCGGTTCTTAGGCTTATTCCCATATGGATAACTT-CTGTAGTCTACACCAT 976
Query 948 TGTACATGCACAAGCCCCTACTTTCTTTACAAAGCAAGGAGACACAATGGACAGGTCAAT 1007
||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 977 TGTACATGCACAATCCCCTACTTTTTTTACAAAGCAAGGAGCCACAATGGACAGGTCAAT 1036
Query 1008 CTCACCAGGACTCTTAGTCCCTGCAGCTACACTTCAAAGTTTCATAAACCTCTCAATAGT 1067
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1037 CTCACCAGGACTCTTAGTTCCTGCAGCTACACTTCAAAGTTTCATAAACCTCTCAGTAGT 1096
Query 1068 CGTTTTCATCCCCATCTACGACCGTTTACTCGTCCCATTTGCAAGATCCTTTACTCAAAA 1127
|||||||||||| ||||||||||| |||||||||||||| ||||| ||||| ||||||||
Sbjct 1097 CGTTTTCATCCCAATCTACGACCGCTTACTCGTCCCATTCGCAAGGTCCTTCACTCAAAA 1156
Query 1128 AC-CATCAGGAATCACAATGCTACAAAGGATTGGTACAGGAATTTTCCTCTCCATTCTTG 1186
| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1157 -CTCATCAGGTATCACAACGCTACAAAGGATTGGTACAGGGATTTTCCTCTCCATTCTTG 1215
Query 1187 CTATGGTAGTAGCCGCCTTAATCGAGACCAAAAGGCTACA-GACTACTCGGGATGACCTC 1245
|||||||| ||||||| || ||||||| |||||||| || | | | |||||||| |||
Sbjct 1216 CTATGGTATTAGCCGCATTGGTCGAGACAAAAAGGCTCCAAGCCGCC-CGGGATGAACTC 1274
Query 1246 ACCATACCGATGAGCGTGTGGTGGCTGGTTCCACAGTATGTTATCCTTGGAGTCTCAGAT 1305
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1275 TCCATACCGATGAGCGTGTGGTGGCTGATTCCACAGTATGTTATCTTTGGAGTCTCAGAT 1334
Query 1306 GTGTTCACAATGGTGGGTTTGCAAGAGTTCTTCTACGACCAAGTCCCTAGTGAGCTTAGG 1365
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1335 ATGTTCACAATGGTGGGTTTACAAGAGTTCTTCTACGGCCAAGTCCCTAGTGAGCTTAGG 1394
Query 1366 AGCATTGGTATGGCTTTGAACCTAAGCATATACGGGGCGGGAAACTTCCTAAGCAGCTTT 1425
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1395 AGCGTTGGTATGGCTTTGAACCTAAGCATATACGGGGCGGGAAACTACCTAAGCAGCTTT 1454
Query 1426 ATGATATCAGTCATTGATAAAATCACTAGCCAGTATGGTCAAACGAGCTGGTTCGATAAT 1485
|||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 1455 ATGATATCAGTCATTGATAAAATCACGAACCAGTATGGTCAAAGGAGCTGGTTCGATAAT 1514
Query 1486 GACTTGAACCAAGCTCATCTAGATTACTTCTACTGGCTACTCGCTTGTCTCAGCTTCATT 1545
|||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1515 GACTTGGACCAAGCTCATCTAGATTACTTCTACTGGCTACTGGCTTGTCTCGGCTTCATT 1574
Query 1546 GGTTTAGCCTCCTATTTATGGTTCGCCAAGTCGTATGCCTACAACAGACCGAACAC-TTT 1604
||||| |||| ||| ||||||||||||||||| |||| ||||| |||| | ||||| |||
Sbjct 1575 GGTTTCGCCTTCTACTTATGGTTCGCCAAGTCATATGTCTACAGCAGATCAAACACCTTT 1634
Query 1605 CTAA 1608
|||
Sbjct 1635 -TAA 1637
> AT1G72131.1 | Symbols: | pseudogene of proton-dependent oligopeptide
transporter | chr1:27139395-27140536 FORWARD LENGTH=926
Length=926
Score = 821 bits (444), Expect = 0.0
Identities = 724/857 (84%), Gaps = 28/857 (3%)
Strand=Plus/Plus
Query 169 CTGACAGGACCATTAGGTGAGTCAACAGCTGTC-GCGGCAGCGAATGTCAATGCTTGG-G 226
||||| ||||||||||| ||||||||||||| | || ||||| |||||||| || ||| |
Sbjct 79 CTGACCGGACCATTAGGGGAGTCAACAGCTG-CAGCTGCAGCCAATGTCAACGCATGGAG 137
Query 227 TTGGAACAGTGTCGTTTCTGCCGCTTCTCGGGGGCTTTGTCGCTGACTCGTTTCTCGGTC 286
||| ||||||||||| || ||||||||||||||| |||||||||||||||| || |
Sbjct 138 -TGG---GGTGTCGTTTCTTCCCCTTCTCGGGGGCTTTATCGCTGACTCGTTTCTTGGAC 193
Query 287 GTTTCCGTACTATCGCCATCTCATCTTCTCTCTATATCTTGGGACTTGGGTTGCTGTCCT 346
|||| ||||| |||| ||| | | |||||| |||||| ||||||||||||||||||| |
Sbjct 194 GTTTTCGTACAATCGTGATCGCGTATTCTCTTTATATCATGGGACTTGGGTTGCTGTCTT 253
Query 347 TTTCAACCATGA-TTCCTTCTCACCGC-AAAGATTCGAATCAGCTCCAAGTGACTCTCTT 404
||||| |||||| || ||||| | | | |||||| | ||||| |||||||||| ||||||
Sbjct 254 TTTCAGCCATGACTT-CTTCT-AACTCTAAAGATCCAAATCAACTCCAAGTGATTCTCTT 311
Query 405 CTTCTGCTCTCTGTATCTTGTAGCAATAGGACAAGGCGGTTACAAACCGTGTATCAAGGT 464
||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct 312 CTTCTGCTCTCTGTATCTTATAGCAATAGGACAAGGCGGTTACAAACCATGTATTAAGGT 371
Query 465 ATTTGGAGCTGATCAATTCGATGGAAATGATCTAAAAGAGGCAAAAGACAAGAGTTCTTT 524
||||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 372 ATTTGGAGCAGATCAATTTGATGGAAATGATATAAAAGATGCAAAAGACAAGAGTTCTTA 431
Query 525 CTTCAACTGGTTGATGTTTGGAAACTGTATTAGCATCTTGACGACTCGTTTAGTCTCTAC 584
||| || |||||||||||||||| ||| ||||||| ||||| |||||| |||||||
Sbjct 432 CTTTAATTGGTTGATGTTTGGAAGTTGTGTTAGCATATTGACCTTTCGTTTGGTCTCTAG 491
Query 585 CTATATTCAAGAGAACCTAAGCTGGTCACT-AGGATTTGGTATTCCAAGTGTTTCCATGT 643
||| || |||||| ||||||| ||||| || ||||||||||||||||||||||| ||||
Sbjct 492 CTACATACAAGAGGACCTAAGTTGGTC-CTTAGGATTTGGTATTCCAAGTGTTTTCATGC 550
Query 644 TGCTTGCTCTGTTTCTCTTCCTCCTTGGAACTAACTCTTACCGTTTTAGTACTG-AGAGA 702
| |||||||||||||||||||| || || ||||| ||||||||||||| |||| | |||
Sbjct 551 TACTTGCTCTGTTTCTCTTCCTTCTCGGCACTAAGACTTACCGTTTTAGCACTGCA-AGA 609
Query 703 GAAGGAAAGAAAAACCCTTTTGCGAGAATCAGTCGTGTTTTCATGGAGGCTTTAAAGAAC 762
||||| |||||||| |||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct 610 GAAGGGAAGAAAAATCCTTTTGCTAGAATCAGTCATGTTTTCATGGCGGCTTTAAAGAAT 669
Query 763 CA-AAGACAACCCGATTTAGATAAAGCTAACGCGAACGAGACTCTCCTTCTCCTGGCTCA 821
| || |||||| |||| | ||| ||||||| | |||||||| | | ||||| ||||
Sbjct 670 -AGAACACAACCAGATTCATATATAGCTAACCCCAACGAGAC-C-C-TTCTCA---CTCA 722
Query 822 CCAGAGTTCCAAACAGTTCAGATTCCT-AGACAGGGCAGCTATTTCATGT-GAATTGGCT 879
||||||||||| |||||||||||||| | ||| |||||| ||||| ||| | ||| ||
Sbjct 723 TCAGAGTTCCAAGCAGTTCAGATTCCTCA-ACAAGGCAGCGATTTCTTGTAGTTTTG-CT 780
Query 880 GAAATTGAAGAAGCAAAGGCGGTTCTTAGGCTTATTCCCATATGGATAACTTGCGTAGTT 939
||||||||||||||||| ||||| |||| |||| | ||||| ||| | |||||| ||||
Sbjct 781 GAAATTGAAGAAGCAAAAGCGGTGCTTAAGCTTGT-CCCATGTGGCTGACTTGCTTAGTC 839
Query 940 TACACCATTGTACATGCACAAGCCCCTACTTTCTTTACAAAGCAAGGAGACACAATGGAC 999
|| | |||||| ||||||| | | ||||||||| ||||||||||||| || |||||||
Sbjct 840 TATGCTATTGTATGTGCACAATCTCATACTTTCTTCACAAAGCAAGGAGCCAAAATGGAC 899
Query 1000 AGGTCAATCTCACCAGG 1016
|||| ||| | ||||||
Sbjct 900 AGGTTAATGTGACCAGG 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5