BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316308
Length=1359
Score E
Sequences producing significant alignments: (Bits) Value
AT1G73650.3 | Symbols: | Protein of unknown function (DUF1295)... 1083 0.0
AT1G73655.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1070 0.0
AT1G18180.1 | Symbols: | Protein of unknown function (DUF1295)... 667 0.0
> AT1G73650.3 | Symbols: | Protein of unknown function (DUF1295)
| chr1:27688123-27690307 REVERSE LENGTH=1337
Length=1337
Score = 1083 bits (586), Expect = 0.0
Identities = 627/647 (97%), Gaps = 2/647 (0%)
Strand=Plus/Plus
Query 673 GTGGTTTACCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 732
||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 194 GTGATTTACCAGTTCATATTCTTCGTAATCACGGCTCTTTTCAAATTTGATCAAGTCACT 253
Query 733 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTGTTCTTAAAGCC 792
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 254 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTGTTCTCAAAGCC 313
Query 793 TCTTGGCATTTTCGGCAGATAGTCTTGACTTTGCTAGTTGTGGTATGGGGTCTTCGCTTG 852
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 314 TCTTGGCATTTTCGACAGATAGTATTGACTTTGCTAGTTGTGGTATGGGGTCTTCGCTTG 373
Query 853 GGGATATTCCTCCTAATGAGGATCTTGCAATGGGGCGAAGATCGACGCTTTGATGAACAG 912
||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 374 GGGATTTTCCTTCTAATGAGGATCTTGCAATGGGGGGAAGATCGTCGCTTTGATGAACAG 433
Query 913 CGTGGGAATATAGTGAGACTAATCATTTTCTGGACTCTTCAGGCCGTGTGGGTTTGGACG 972
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 434 CGTGGAAATATAGTGAGACTAATCATTTTCTGGACTCTTCAGGCTGTGTGGGTTTGGACG 493
Query 973 GTTAGCTTACCTTTAAC-CGTTGTTAATGCAAGTGATGGTGGAGGATCTCTTAAACCCGC 1031
||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 494 GTTAGCTTACCTTTAACAC-TTGTTAATGCAAGTGATGGTGGTGGATCTCTTAAACCCGC 552
Query 1032 AGATGTTATCGGTTGGACTATGTGGGTTTTCGGTTTCTTGATTGAAGCTGCAGCTGATCA 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 AGATGTTATCGGTTGGACTATGTGGGTTTTCGGTTTCTTGATTGAAGCTGCAGCTGATCA 612
Query 1092 ACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGATGTTGGAGT 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 ACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGATGTTGGAGT 672
Query 1152 GTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGGGGGATCTT 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 673 CTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGGGGAATCTT 732
Query 1212 TGTGGCTGCATCGCCTGTGCTTGAAGGTGCAGAGTATCTTGTCATATTCGGACCACTCTT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TGTGGCTGCATCGCCTGTGCTTGAAGGTGCAGAGTATCTTGTCATATTCGGACCACTCTT 792
Query 1272 TCTCACTTTGCTACTTCTGTTCGTCAGTGGCATACCATTACTCGAGG 1318
|||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 793 TCTCACTTTGCTACTTCTATTCGTCAGCGGCATACCATTACTCGAGG 839
> AT1G73655.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr1:27690359-27691814 REVERSE LENGTH=847
Length=847
Score = 1070 bits (579), Expect = 0.0
Identities = 645/676 (95%), Gaps = 7/676 (1%)
Strand=Plus/Plus
Query 1 ATGGCGACTCTCTTCACTGCGACGGTTCCTTCTCACCACCGTTTCGTCTCT-CATTCCCA 59
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 34 ATGGCGACTCTCTTCACTGCGACGGTTCCTTCTCACCACCGTTTCGTCTCTCCA-TCCCA 92
Query 60 ACATCCGAAACAGAGTCTTCCATCGCAGTCGCTAAGCGTCACTTTCACGGAGATTCCAGA 119
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |
Sbjct 93 ACATCCGAAACAGAGTCTTCTATCGCAGTCGCTAAGCGTCACATTCACGGAGAATCCACA 152
Query 120 ACCAGCGGCGGTGATCACATTGCGGGAGCAGCAAACGACGGATTGGATTGCTTCTCCGGT 179
|||| |||||||| ||||||||| |||||||||| ||||||||||||| ||||||||||
Sbjct 153 ACCAACGGCGGTGGTCACATTGCAGGAGCAGCAATTGACGGATTGGATTACTTCTCCGGT 212
Query 180 GACGCGACGGTTCGGGATCGGCGCCGGGTTTTCCTGGGCTGGGTTTTTAGCTTTCGGTGT 239
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 213 GACGCGACGGTTCGGAATCGGCGCCGGGTTTACCTGGGCTGGGTTTTTAGCTTTCGGTGT 272
Query 240 TGTCTCCGAGCAGATGAAGAAGTCACGACTCAATGTGTTTCAGGAAGACGATAACACAAG 299
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 273 TGTCTCCGAGCAGATGAAGAAGTCACGACTCGATGTGTTTCAGGAAGAGGATAACACAAG 332
Query 300 AGGTTTAGAAAAGCAAGAAGAGACCGTCTTACCAAACGGCATAAGGTACTATGATCTACA 359
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 333 AGGTTTAGAAAAGCAAGAAGAGATCATCTTACCAAACGGCATAAGGTACTATGATCTACA 392
Query 360 AGTTGGAAGTGGAGCTACTCCAAGCTCAGGATACTTGGTAGTGTTTGATGTAAAGGGACA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 AGTTGGAAGTGGAGCTACTCCAAGCTCAGGATACTTGGTAGTGTTTGATGTAAAGGGACA 452
Query 420 AGTACATGGAACCGAACAAGTGTTCGTCGACACAATTGGAGGCAAAGACAAAAAGTCACT 479
||||||||| || |||||||||||||| |||||| |||||||||||| ||| ||||||
Sbjct 453 AGTACATGGCACTGAACAAGTGTTCGTGGACACATTTGGAGGCAAAGGCAA---GTCACT 509
Query 480 AGCGATGGTAATGGACTCAAGACCGTATAGCAAGGGACTATGCCAAGGTATAGAGTATGT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 510 AGCGATGGTAATGGACTCAAGACCGTATAGCAAGGGACTATGCCAAGGTATAGAGCATGT 569
Query 540 TCTGAGGTCAATGAAGGCTGGAGGTAAACGTAGAGTGATAATTCCACCGTCCTTAGGATT 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TCTCAGGTCAATGAAGGCTGGAGGTAAACGTAGAGTGATAATTCCACCGTCCTTAGGATT 629
Query 600 TGGAGACAAAAATGTCGAATTTGGACAGGGTTTG-ATGATTCCTCCATCTGCAACACTTG 658
|||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 630 TGGAGACAGAAATGTCGAATTTGGACAGGGTTTGGA-GATTCCTCCATCTGCAACACTTG 688
Query 659 ACTATATCATCGAGGT 674
||||||||||||||||
Sbjct 689 ACTATATCATCGAGGT 704
> AT1G18180.1 | Symbols: | Protein of unknown function (DUF1295)
| chr1:6255830-6257900 FORWARD LENGTH=1154
Length=1154
Score = 667 bits (361), Expect = 0.0
Identities = 562/657 (86%), Gaps = 22/657 (3%)
Strand=Plus/Plus
Query 673 GTGGTTTACCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 732
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 GTGGGTTATCAATTCATATTCTTCGTAATCACAGCTCTTTTCAAATTTGATCAAGTTACT 184
Query 733 GACTTTGCTGGTAGCACAAACTTCGTTATACTTGCTGTGTTAACACTTG-TTCTTAAAGC 791
|||||||| || || ||||| ||||| ||||||||||| || || || | |||| ||||
Sbjct 185 GACTTTGCCGGAAGTACAAATTTCGTGATACTTGCTGTATTGACTCT-GCTTCTCAAAGG 243
Query 792 CTCTTGGCATTTTCGGCAGATAGTCTTGACTTTGCTAGTTGTGGTATGGGGTCTTCG-CT 850
| ||||||| ||| ||||||||||||||| ||||||| || |||||||| ||||| ||
Sbjct 244 GACATGGCATTATCGTCAGATAGTCTTGACTGTGCTAGTAGTCGTATGGGGACTTCGTCT 303
Query 851 TGGGGA-TATTCCTCCTAATGAGGATCTTGCAATGGGGCGAAGATCGACGCTTTGATGAA 909
||| | | |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 304 -GGG-ACTGTTCCTCCTTATGAGGATCTTGCAATGGGGTGAAGATCGACGCTTTGATGA- 360
Query 910 CA-GCGTGGGAATATAGTGAGACTAATCA-T-TTTCTGGACTCTTCAGGCCGTGTGGGTT 966
|| ||||| ||||| | || |||| | | | ||| |||| | |||||||||||||||||
Sbjct 361 CATGCGTGAAAATATTGGGAAACTAGT-AGTCTTT-TGGATTTTTCAGGCCGTGTGGGTT 418
Query 967 TGGACGGTTAGCTTACCT-TTAACCGTTGTTAATGCAAGTGATGGTGGAGGATCTCTTAA 1025
||||| ||||| |||||| ||| || ||||||||||||| | |||||| ||| | ||
Sbjct 419 TGGACTGTTAGTTTACCTGTTA-CCTTTGTTAATGCAAGCAACGGTGGAAGAT-TGTTTC 476
Query 1026 A-CCCGCAGATGTTATCGGTTGGACTATGTGGGTTTTC-GGTTTCTTGATTGAAGCTGCA 1083
| ||||||||||||||||||||||| ||||||||| | || ||||||||||||||| ||
Sbjct 477 AGCCCGCAGATGTTATCGGTTGGACAATGTGGGTTG-CAGGGTTCTTGATTGAAGCTACA 535
Query 1084 GCTGATCAACAGAAGCTATCATTCAAAAACTCTCCTGAAAACAGAGGAAAATGGTGTGAT 1143
||||||||||| ||||| || ||||| || | ||| ||||||| ||||||||||||||||
Sbjct 536 GCTGATCAACAAAAGCTTTCGTTCAAGAAGTGTCCAGAAAACAAAGGAAAATGGTGTGAT 595
Query 1144 GTTGGAGTGTGGAAGTATTCAAGACATCCAAACTACTTCGGTGAGATGTTACTGTGGTGG 1203
||||| || |||||||||||| | |||||||||||||| |||||||||||||| ||||||
Sbjct 596 GTTGGTGTATGGAAGTATTCACGCCATCCAAACTACTTTGGTGAGATGTTACTCTGGTGG 655
Query 1204 GGGATCTTTGTGGCTGCATCGCCTGTGCTTGAAGGTG-CAGAGTATCTTGTCATA-TTCG 1261
|| | | ||||||| ||| |||||||||| ||||| | ||||| ||||||||| || |
Sbjct 656 GGCTTATATGTGGCTTCATTGCCTGTGCTTAAAGGTCTC-GAGTACCTTGTCATAATT-G 713
Query 1262 GACCACTCTTTCTCACTTTGCTACTTCTGTTCGTCAGTGGCATACCATTACTCGAGG 1318
||||| |||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 714 GACCAGTCTTTCTCACTTTGCTACTTCTCTTCGTTAGCGGCATACCATTACTCGAGG 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66917326485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5