BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg316716
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78070.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2100 0.0
AT1G36070.1 | Symbols: | Transducin/WD40 repeat-like superfami... 350 3e-95
> AT1G78070.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:29355022-29358993 FORWARD LENGTH=2077
Length=2077
Score = 2100 bits (1137), Expect = 0.0
Identities = 1280/1351 (95%), Gaps = 2/1351 (0%)
Strand=Plus/Plus
Query 1 ATGGATATATTCGACAACTCTGATCTTGAATACCTTGTGGATGAATTTCACGCTGGTTTC 60
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 103 ATGGATATTTTCGACAACTCTGATCTTGAATACCTTGTTGATGAATTTCACGCTGATTTC 162
Query 61 GATGATGATGAACCCTTTGGAGAGGTCGATATCACCAGTGATTCTGATTCTGATTTCATG 120
||||||||||| |||||||||||||| ||| |||||||||| |||||||| |||||||||
Sbjct 163 GATGATGATGAGCCCTTTGGAGAGGTTGATGTCACCAGTGAGTCTGATTCCGATTTCATG 222
Query 121 GACTCCGATTTCGATTTCGAGCTGAGTCAGAGTAAGACGAACAATGATACATCAGCGTTA 180
||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 223 GACTCCGATTTTGATTTCGAGCTGAGTGAGAGTAAGACGAACAATGAAACATCAGCGTTA 282
Query 181 GAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCTTGGGAGAGCATGAATTACACGAGG 240
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 283 GAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCATGGGAGAGCTTGAATTACACGAGG 342
Query 241 GATAGATACCGTGAGAACAGATTGCTACACTATAAAAACTTTGAGAGTCTCTTTAGATCC 300
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 343 GATAGATACCGTGAGAATAGATTGCTGCACTATAAAAACTTTGAGAGTCTGTTTCGATCC 402
Query 301 AGAGAAGAGCTTGATAAGGATTGCTTGCAAGTTGAGAAAGGAAAAAACTTTTATGACTTT 360
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 403 AGAGAAGAGCTTGATAAGGAATGCTTGCAAGTAGAGAAAGGAAAGAACTTTTATGACTTT 462
Query 361 CAGTTCAACACGAGGCTTGTCAAGTCCACAATTGCACATTTTCAGCTGAGGAACTTGGTA 420
|||||||| || |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 463 CAGTTCAATACAAGGCTTGTCAAGTCCACAATAGCGCATTTTCAGCTGAGGAACTTGGTA 522
Query 421 TGGGCAACATCAAAGCACGATGTGTATTTCATGAACAACTACTCTCTCATGCATTGGTCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 523 TGGGCAACATCAAAGCACGATGTGTATTTCATGAACAACTACTCTCTCATGCACTGGTCA 582
Query 481 TCTTTGCTGCAAAGGGGCAAAGAAGTACTCAATGTGGCGAAGCCCATTGTTCCTACAATG 540
|||||| |||||||||||||||||||||| |||||||| ||||||||||||||| |||||
Sbjct 583 TCTTTGTTGCAAAGGGGCAAAGAAGTACTTAATGTGGCAAAGCCCATTGTTCCTTCAATG 642
Query 541 AAGCAGCATGGATCGTTGTCGCAGTCTGTATCAAGAGTCCAGATAAGCACCATGGCAGTT 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 643 AAGCAGCATGGATCGTTGTCACAGTCTGTATCAAGAGTCCAGATAAGCACCATGGCAGTT 702
Query 601 AAAGACGATTTAATAGTTGCGGGAGGGTTCCAAGGGGAACTTATCTGCAAGAGAATCAAC 660
||||||||||| ||||||||||||||||||||||| || |||||||| |||| |||||||
Sbjct 703 AAAGACGATTTGATAGTTGCGGGAGGGTTCCAAGGAGAGCTTATCTGTAAGAAAATCAAC 762
Query 661 GAACCTGAGGTTGCTTTCTGCACAAAACTAACATCAGCTGAAAACGACATCACCAATTCG 720
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 763 GAACCTGAGGTTGCTTTCTGCACTAAACTAACATCAGCTGATAACGACATCACCAATTCG 822
Query 721 GTTGACATATACAACGCACCTAGTGGCTCGTTAAGAGTCATGGCCGCGAACAATGACTGT 780
|||||||| |||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 823 GTTGACATCTACAACGCACCTAGTGGCTCGTTAAGGGTTATGACCGCGAACAATGACTGT 882
Query 781 ACTGTCCGGCTATTTGATGCCACAAACTTTGCCTTCCTCAACAG-TTTCACCTTTGATTG 839
||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| | ||
Sbjct 883 ACTGTCCGGCTATTTGATGCCACAAACTTTGCCTTGCTCAACAGATTTG-CCTTTCACTG 941
Query 840 GTCTGTAAATAACATTTCCACCAGTCCAGACGGCAAGTTAGTGGCTGTTCTAGGGGACAG 899
||||||||||||||| |||||||||||||| || ||| |||||||||||||||| |||||
Sbjct 942 GTCTGTAAATAACATCTCCACCAGTCCAGATGGTAAGCTAGTGGCTGTTCTAGGAGACAG 1001
Query 900 TCCAGAGTGCTTACTAGCAGATACCGGATCTGGAAAAGTGATCCACGGACTCGAAGGCCA 959
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TCCTGAGTGCTTACTAGCAGATACCGGATCTGGAAAAGTGATCCACGGACTCGAAGGCCA 1061
Query 960 TCTAGACTACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCCTAGCCACGGGCAA 1019
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1062 TCTCGACTACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCTTAGCCACGGGTAA 1121
Query 1020 TCAAGACACAACCTGTAGGCTATGGGACATAAGGAACCTGTCTCAATCCCTCAAATTGTT 1079
||||||||||||||||| ||||||||| ||||||||||||||||||| |||||| | ||
Sbjct 1122 CCAAGACACAACCTGTAGACTATGGGACGTAAGGAACCTGTCTCAATCACTCAAAGTCTT 1181
Query 1080 GAAAGGAAACATGGGAGCCATCCGAGCCTTGAGGTTCACGTCTGATGGTCGGTTCTTAGC 1139
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1182 GAAAGGAAACATGGGAGCTATCAGAGCCTTGAGGTTCACGTCTGATGGACGGTTCTTAGC 1241
Query 1140 CATGGCTGAGCCAGCAGACTTTGTACACTTGTTTGATACGGAAGCTGGTTACACTCAGTG 1199
||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1242 CATGGCTGAGCCAGCGGACTTTGTACACTTGTTTGACACGGAAGCTGGTTACAGTCAGTG 1301
Query 1200 TCAAGAGATTGATCTGTTTGGAGAAATAGCGGGAATCTCGTTTAGCCCTGACACGGAGGC 1259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1302 TCAAGAGATTGATCTGTTTGGAGAAATAGCGGGAATCTCGTTTAGCCCCGACACGGAGGC 1361
Query 1260 ACTGTTCGTGGGAGTAGCTGATCGTACTTACGGTAGCTTGTTGGAGTTTAACAGGAAGCG 1319
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1362 ACTGTTCGTGGGAGTAGCTGATCGTACGTACGGCAGCTTGTTGGAGTTTAACAGGAAGCG 1421
Query 1320 AAACCACTCGTATGTTGATTCCATATTCTGA 1350
|||||||||||||||||||||||||||||||
Sbjct 1422 AAACCACTCGTATGTTGATTCCATATTCTGA 1452
> AT1G36070.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:13466911-13470899 REVERSE LENGTH=1908
Length=1908
Score = 350 bits (189), Expect = 3e-95
Identities = 878/1200 (73%), Gaps = 89/1200 (7%)
Strand=Plus/Plus
Query 165 TGATACATCAGCGT-TAGAAGCTAGGAATGGAAAAGATATTCAAGGGATTCCTTGGG-AG 222
|||||||||||| | ||| || |||||||| ||||| || |||||||||| |||| ||
Sbjct 461 TGATACATCAGC-TCAAGAGGCAAGGAATGGTAAAGACATACAAGGGATTCAGTGGGAAG 519
Query 223 AGCATGAATTACACGAGGGATAGA-TACCGTGAGAAC-AGATTGCTACACTATAAAAACT 280
| | || || | || || || | |||||| || || ||| ||| ||| | ||||
Sbjct 520 -GGTTTAAGTATAATAGAGA-CGAGTTTCGTGAG-ACTAGGTTGAAACAATATGATAACT 576
Query 281 TTGAGAGTCTCTT------TAGATC-CAGAGAAGAGCTTGATAAGG---AT-TGCTTGCA 329
||| | | |||| ||| || | ||||| |||||||||||| || || |
Sbjct 577 TTGTTAATATCTTAAGGCCTAGCTCTC-GAGAAAAGCTTGATAAGGAACATGGGCAAG-T 634
Query 330 AGTTGAGAAAGGAAAAAACTTTTATGACTTTCAGTTCAACACGAGGCTTGTCAAGTCCAC 389
||||||||||||||| |||||||||||||| || ||||| || |||||||||| |||||
Sbjct 635 AGTTGAGAAAGGAAAGAACTTTTATGACTTCCAATTCAATACAAGGCTTGTCACTTCCAC 694
Query 390 AATTGCACATTTTCAGCTGAGGAACTTGGTATGGGCAACATCAAAGCACGATGTGTATTT 449
|||| ||||||||||| |||| ||||||||||| ||||| ||||| ||||| ||| |
Sbjct 695 TATTGTGCATTTTCAGCTTCGGAATTTGGTATGGGCGACATCTAAGCATGATGTATATCT 754
Query 450 CATG-AACAACTACTCTCTCATGCATTGGTCATCTTTGCTGCAAAG-GGGCAAAGAAGTA 507
||| || || || || |||||||| ||||||||| | || || || ||| |||||||||
Sbjct 755 AATGCAA-AATTATTCACTCATGCACTGGTCATCTCTACTCCAGAGAGGG-AAAGAAGTA 812
Query 508 CTCAATGTGGCGAAGCCCATTGTT-CCTACAAT--GAAGC-AGCATGGATCGTTGTC-GC 562
|| ||||| || || || ||| || || | ||| | | | ||||| ||| || |
Sbjct 813 CTTAATGTCGC-CAGATCA--GTTACCCCCACTCAGAAACTA-CCTGGATTGTTTTCTG- 867
Query 563 AGTCTGTATCAAGAGT-CCAGATAAGCACCATGGCAGTTAAAGACGATTTAATAGTTGCG 621
|| | | || || || | || | |||| ||||||||| ||||| || | || ||
Sbjct 868 AGCCACTCTCTAGGGTGCAAG-TTAGCAGCATGGCAGTCAAAGAAAATCTGATCCTTTTA 926
Query 622 GGAGGGTTCCAAGGGGAACTTATCTGCAAGAGAATCAA-CGAACCTGAGGTTGCTTTCTG 680
||||||||| | ||||| ||| |||||||| | | || | | |||| ||||||||| ||
Sbjct 927 GGAGGGTTCGACGGGGAGCTTCTCTGCAAGTGTGTAAATC-AGCCTGGGGTTGCTTTTTG 985
Query 681 CACAAAACTAACATCAGCTGAAAACGACATCACCAATTCGGTTGACATATA-CAACGCA- 738
||||| | || || | | || || | |||||| || | ||||| ||||| | | | |
Sbjct 986 CACAAGATTATCAACGGAAGATAATGCCATCACAAACACAGTTGATATATACCGA-G-AC 1043
Query 739 CCTAGTGGCT-CGTTAAGAG-TCATGGCCGCGAACAATGACTGTACTGTCCG-GCTATTT 795
|| ||||||| | || || | | || |||| || || ||||||| | || | ||||
Sbjct 1044 CCAAGTGGCTCCCTT-AG-GCTTATAACCGCAAATAACGACTGTAAAATTCGTG-TATTC 1100
Query 796 GATGCCACA-AACTTTGC-CTTCCTCA-ACAGTTTCACCTTT-GATTGGTCTGTAAATAA 851
|||| | || | |||| | | | ||| | ||| |||| ||||||||||| |||||
Sbjct 1101 GATG-CTCAGAGCTTTACACGT-GTCAGTGAATTT--GCTTTAGATTGGTCTGTCAATAA 1156
Query 852 CATTTCCA-CCAGTCCAGACGGCAAGTTAGTGGCTGTTCTAGGGGACAGTCCAGAGTGCT 910
| | || || || || || ||| || | ||||| | ||||||||| |||| ||||
Sbjct 1157 TACCT-CAGTTAGCCCGGATGGGAAGCTACTCGCTGTAGTCGGGGACAGTACAGAATGCT 1215
Query 911 T-ACTAGCAGATACCGGA-TCTGGAAAAGTGA-TCCACGGACTCGA-AGGCCATC-TAGA 965
| | | | ||| || | ||||||||||| | | || | ||| | |||||| | |||
Sbjct 1216 TGA-TCTCTGATTCC-CATTCTGGAAAAGTTATTTCA-AGCCTC-AGAGGCCA-CAAAGA 1270
Query 966 CTACTCGTTTTCATCAGCATGGCACCCAAACGGTCAAATCCTAGCCACGGGCAATCAAGA 1025
|||||| ||| |||| || |||||||| || |||| |||| |||| ||||| || |||||
Sbjct 1271 CTACTCATTTGCATCTGCTTGGCACCCGAATGGTCTAATCTTAGCAACGGGAAACCAAGA 1330
Query 1026 CACAACCTGTAGGCTATGGGACATAAGGAACCTGTCTCAATCCCTCAAATTGT--TGAAA 1083
||| | || | || |||||||| | |||| ||| |||| || ||| |||||
Sbjct 1331 CACGGCATGCCGTCTCTGGGACATTCGTAACCCGTCAGAATCATTC--GCTGTCCTGAAA 1388
Query 1084 GGAAACATGGGAGCCATCCGA-GCCTTGAGGTTCACGTCTGATGGTCGG-TTCTTAGCCA 1141
|||||||||||||||||| || | | ||| |||||| | || || ||| ||||| || |
Sbjct 1389 GGAAACATGGGAGCCATCAGAGGAC-TGAAGTTCACACCAGAAGGGCGGTTTCTT-GCAA 1446
Query 1142 TGGCTGAGCCAGCAGACTTTGTACACTTGTTTGATACGGAAG--CTGGTTACACT-CAGT 1198
|||||||||| ||||||||||| ||| | || || || | || | |||| || ||||
Sbjct 1447 TGGCTGAGCCTGCAGACTTTGTTCACATCTTCGACAC-GCAGTCCGGGTT--TCTACAGT 1503
Query 1199 GTCAAGAGATTGATCTGTTTGGAGAAATAGC-GGGAATCTCGTTTAGCCCTGACACGGAG 1257
||||||||||||||||||||||||||||| |||| ||||||| ||||| || || |||
Sbjct 1504 CCCAAGAGATTGATCTGTTTGGAGAAATAGCCGGGA-TCTCGTTCAGCCCCGATACAGAG 1562
Query 1258 GCACTGT-TCGT-GGGAGTAGCTGATCGTACTTACGGTAGCTTGTTGGAGTTTAACAGGA 1315
||||| | | || ||| || || || || ||||| || || ||| |||||| ||| ||||
Sbjct 1563 GCACTATAT-GTAGGG-GTCGCAGACCGCACTTATGGAAGTTTGCTGGAGTATAAGAGGA 1620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5