BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317046

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G01435.1 | Symbols:  | Expressed protein | chr3:166619-16828...   582    6e-166


> AT3G01435.1 | Symbols:  | Expressed protein | chr3:166619-168288 
REVERSE LENGTH=811
Length=811

 Score =  582 bits (315),  Expect = 6e-166
 Identities = 337/348 (97%), Gaps = 0/348 (0%)
 Strand=Plus/Plus

Query  1    ATGGACCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTCGAGAATAGAGTT  60
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  230  ATGGATCCGCAGACGCAGAACACTTCGTTGCAGCGACTCCAGAATGTTGAGAATAGAGTT  289

Query  61   GTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCTAGGCCTTCTGGACCC  120
            |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||
Sbjct  290  GTTAAGGTTTTGGAACTAGCTGGTGGAGTGATGGAAGAACTCGCGAGCCCTTCTGGTCCC  349

Query  121  AAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGTTTATGCAATCTATGAAGGATATTCAA  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  350  AAGAAAGAGTTCGTCAACAGCCATTGCCGAGAGTTTATGCAATCTATGAAGGATATACAA  409

Query  181  GTGACACTAAGAGAAGAGATCAAAAGCGCTTGCGAGTACCGTCCCTTTGAGAAATGCGAT  240
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  410  GTGACACTAAGGGAAGAGATCAAAAGCGCTTGCGAGTACCGTCCCTTTGAGAAATGCGAT  469

Query  241  TACAACGCTAGAATAGCTAATGAGATCTGCTTCCAGAAGCTTGAATATGTTCTCACGCAG  300
            |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  470  TACAACGCGAGAATAGCCAATGAGATCTGCTTCCAGAAGCTTGAATATGTTCTCACGCAG  529

Query  301  CTTGATGATCTGAAACAAACTGCTGACCAGTATCCTTCTTCTGATTGA  348
            ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct  530  CTTGAAGATCTGAAACAAACTGCTGACCGGTATCCTTCTTCTGATTGA  577



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5