BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg317476 Length=1665 Score E Sequences producing significant alignments: (Bits) Value AT3G06140.1 | Symbols: | RING/U-box superfamily protein | chr3... 1764 0.0 AT3G06145.1 | Symbols: | unknown protein; Has 15 Blast hits to... 758 0.0 > AT3G06140.1 | Symbols: | RING/U-box superfamily protein | chr3:1856682-1858855 REVERSE LENGTH=1469 Length=1469 Score = 1764 bits (955), Expect = 0.0 Identities = 1098/1164 (94%), Gaps = 22/1164 (2%) Strand=Plus/Plus Query 507 tctctctgcttcttc-ctgttctgctttctgtcttgtctctttctttcccattgtcattc 565 |||||||||||| || ||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 12 TCTCTCTGCTTC-TCACTGTTGTGCTTTCTGTCTTGTCTCTGTCTTTCCCATTGTCATTC 70 Query 566 tctcACCAATGGGAATCTCCTTTAGCAACAACAACAGAAGACGAGACAACAATAACAATC 625 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 71 TCTCACCAATGGGAATCTCCTTTAGCAACAACAACAGAAGACGAGACAACAAT---AATC 127 Query 626 GCCGTCACCTCCACCACTATCCT---CCGCCGCCTTACTATTACCTCGACCCTCCTCCTC 682 | || |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 128 GTCGCCACCTCCACCACTATCCTCCGCCGCCGCCTTACTATTACCTCGACCCTCCTCCTC 187 Query 683 CTCCGCCGCCGCCATTTCCACCGCATTATGACTATAACTACTCCAATTACCATCTCTCTC 742 || || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 CT---CCTCCGCCATTTCCACCGCATTATGACTATAACTACTCCAATTACCATCTCTCTC 244 Query 743 AACCTCTACCGCCACAGCCACAGATCAACTCTTGTTCCTACGGCCATTACCATTATCACC 802 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 245 CGCCTCTACCGCCACAGCCACAGATCAACTCTTGTTCTTACGGCCATTACCATTATCACC 304 Query 803 CTCAGCCTCCTCAGTATTTCACCACCGCTCAGCCCAATTGGTGGGGTCCAATGGTGAGGC 862 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| | Sbjct 305 CTCAGCCTCCTCAGTATTTCACCACCGCTCAGCCCAATTGGTGGGGCCCAATGATGAGAC 364 Query 863 CGGCGTATTACGGTCCCCCTCAGCCGCAAACGCAAACGCAACCGCTTCCACCGCCATACG 922 ||||||| ||| |||| ||||| || ||||||||||||||| | | ||||||| Sbjct 365 CGGCGTACTACTGTCCGCCTCA---GC---CGCAAACGCAACCGC--CTA-AGCCATACC 415 Query 923 TGGAGCAACAGAACGCGAAGAAGGTGAGGAACGATGTCAATGTGCATAAAGATACAGTGA 982 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 416 TGGAGCAACAGAACGCGAAGAAGGTGAGGAATGATGTCAATGTGCATAGAGATACAGTGA 475 Query 983 GGCTTGGAGTGGACGATCTCGTCCCTGGTCACCATCTAGTTTCCTTCGTCTTCGATGCCC 1042 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 476 GGCTTGAAGTGGACGATCTCGTTCCTGGTCACCATCTAGTTTCCTTCGTCTTCGATGCTC 535 Query 1043 TTTTCGATGGCAGTTTCACTATCACCTTCTTTGCAAAGGAGGAACCAAATTGCACCATTA 1102 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 TTTTCGACGGCAGTTTCACTATCACCTTCTTTGCAAAGGAGGAACCAAATTGCACCATTA 595 Query 1103 TCCCGCAGTTTCCAGAGGTTTATTCACCGACAAGATTTCATTTTCAGAAAGGTCCTGGAC 1162 |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 596 TCCCACAGTTTCCAGAGGTTTATTCACCCACAAGATTCCATTTTCAGAAAGGTCCTGGAC 655 Query 1163 AGAAGTTTCTGCAGCCTTCAGGGACAGGAACAGACCTGAGCTTCTTTGCTCTTGACGATC 1222 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| Sbjct 656 AGAAGTTTCTGCAGCCTTCAGGGACAGGAACTGACCTGAGCTTCTTTGTTCTTGATGATC 715 Query 1223 TGTC-AAGACCTTTACAAGAAGATGTGTATCCGCTTGTAATATCAGCTGAGACGGTAATC 1281 |||| || ||| ||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 716 TGTCTAA-ACCCTTAGAAGAAGATGTGTATCCGCTTGTAATATCAGCTGAGACGATAATC 774 Query 1282 TCTCCTAATTCGATCTCAGAGCAATCATCAGTTCATAAGCAAGTCACACAAGCGGTTCTC 1341 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 TCTCCAAATTCAATCTCAGAGCAATCATCAGTTCATAAGCAAGTCACACAAGCGGTTCTC 834 Query 1342 GAGAAAGATAATGATGGATCTTTCAAAGTGAAAGTGGTGAAGCAGATTCTTTGGATTGAA 1401 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 835 GAGAAAGATAATGATGGATCTTTCAAAGTGAAAGTTGTGAAGCAGATTCTTTGGATTGAA 894 Query 1402 GGAGTTCGATATGAACTCCGTGAGTTGTATGGCTCGACCACTCAAGGTGCAGCCTCGGGA 1461 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 895 GGAGTTCGATATGAACTCCGTGAGTTGTATGGCTCGACCACTCAAGGTGCAGCCTCGGGC 954 Query 1462 TTAGAGGACAGTGGTTCGGGTAAAGAATGTGTGATCTGCATGACTGAGGCTAAGGACACG 1521 ||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 955 TTAGATGAGAGTGGTTCGGGTACAGAATGTGTTATCTGCATGACTGAGGCTAAGGACACG 1014 Query 1522 GCTGTACTGCCTTGCAGACATTTGTGCATGTGTAGCGACTGTGCTAAAGAATTGAGGCTT 1581 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1015 GCCGTGCTGCCTTGCAGACATTTGTGCATGTGTAGCGACTGTGCTAAAGAATTGAGGCTT 1074 Query 1582 CAGTCGAACAAATGTCCGATTTGTCGACAACCCATCGAAGAGCTCTTAGAGATCAAAGTG 1641 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1075 CAGTCCAACAAATGTCCGATTTGTCGACAACCCATCGAAGAGCTCTTAGAGATCAAAATG 1134 Query 1642 AACAGTAGTGATGAACAACACTAG 1665 |||||||||||||||||||||||| Sbjct 1135 AACAGTAGTGATGAACAACACTAG 1158 > AT3G06145.1 | Symbols: | unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1859924-1860650 REVERSE LENGTH=727 Length=727 Score = 758 bits (410), Expect = 0.0 Identities = 476/506 (94%), Gaps = 12/506 (2%) Strand=Plus/Plus Query 1 ATGAATATGAAAACATCAAAGCTGAAGTTCACAAAAGAGATGATAGAGTCTATCAAAGAC 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 33 ATGAATATGAAAACATCAAAGATGAAGTTCACAAAAGAGATGATAGAGTCTATCAAAGAC 92 Query 61 AAGCTCTCAAGGCTCAGCTTCCTCCTCCTCTTCCTCCGACAATGCTACGGTGGCTGCGGC 120 |||||| | |||||||| |||||||||||||||||||||||| |||||| Sbjct 93 AAGCTCCCGAGGCTCAG------------CTTCCTCCGACAATGCTACGGTGGTTGCGGC 140 Query 121 GACCGGACCCACTTACTCCCTTGCTCCATCGCCACCACTTCCACCCGCTTTTGGAACCTC 180 |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 GACCGGACGCATTTACTCCCTTGCTCCATCGCCACCACTTCCACCCGCTTTTGGAACCTC 200 Query 181 TCCGACCGTCCCGTGGAGCTCCAAATTCGGGTCGGTTCAATCCTAAAACGGGTCCACACT 240 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 201 TCCGACCGTCCCGTGGAGCTCCAGATTCGGGTCGGTTCAATTCTAAAACGGGTCCACACT 260 Query 241 CTCAAACCTGGCCGTTCCAAGAGGCTTAGACACAGAAGCATCCACAGAGCTTACGTGGAT 300 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| Sbjct 261 CTCAAACCTGGCCGTTCCAAGAAGCTTAGACACAGAAGCATTCACAGAGCTTACGTTGAT 320 Query 301 GACCAGGAAGGACGTAGATGGCTGTACTACGACGACACGTGCCTACCGTACGTATGGGTG 360 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 321 GACCAGGAAGGACGTAGATGGCTGTACTACGACGACACTTGTCTACCGTACGTATGGGTT 380 Query 361 CACGAGACCGGTACAGACTTGTCGAAGATGGTGAAGCAACAGTACGTGAGTCTCGAGGAT 420 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 381 CACGAGACTGGTACGGACTTGTCGAAGATGGTGAAGCAACAGTACGTGAGTCTCGAGGAT 440 Query 421 CTGAGGGATTACTCGGAGATTAGGGTTTTTAAGGATTTACAGAGAGGTTGCGTCTCAGTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 441 CTGAGGGATTACTCGGAGATTAGGGTTTTTAAGGATTTACAGAGAGGTTGTGTCGCAGTT 500 Query 481 GAGAAAAGAGACAGAgcttctgcttt 506 |||||||||||||||||||||||||| Sbjct 501 GAGAAAAGAGACAGAGCTTCTGCTTT 526 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82278693255 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5