BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg317476

Length=1665
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G06140.1 | Symbols:  | RING/U-box superfamily protein | chr3...  1764    0.0  
  AT3G06145.1 | Symbols:  | unknown protein; Has 15 Blast hits to...   758    0.0  


> AT3G06140.1 | Symbols:  | RING/U-box superfamily protein | chr3:1856682-1858855 
REVERSE LENGTH=1469
Length=1469

 Score = 1764 bits (955),  Expect = 0.0
 Identities = 1098/1164 (94%), Gaps = 22/1164 (2%)
 Strand=Plus/Plus

Query  507   tctctctgcttcttc-ctgttctgctttctgtcttgtctctttctttcccattgtcattc  565
             |||||||||||| || ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct  12    TCTCTCTGCTTC-TCACTGTTGTGCTTTCTGTCTTGTCTCTGTCTTTCCCATTGTCATTC  70

Query  566   tctcACCAATGGGAATCTCCTTTAGCAACAACAACAGAAGACGAGACAACAATAACAATC  625
             |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct  71    TCTCACCAATGGGAATCTCCTTTAGCAACAACAACAGAAGACGAGACAACAAT---AATC  127

Query  626   GCCGTCACCTCCACCACTATCCT---CCGCCGCCTTACTATTACCTCGACCCTCCTCCTC  682
             | || ||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct  128   GTCGCCACCTCCACCACTATCCTCCGCCGCCGCCTTACTATTACCTCGACCCTCCTCCTC  187

Query  683   CTCCGCCGCCGCCATTTCCACCGCATTATGACTATAACTACTCCAATTACCATCTCTCTC  742
             ||   || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  188   CT---CCTCCGCCATTTCCACCGCATTATGACTATAACTACTCCAATTACCATCTCTCTC  244

Query  743   AACCTCTACCGCCACAGCCACAGATCAACTCTTGTTCCTACGGCCATTACCATTATCACC  802
               ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  245   CGCCTCTACCGCCACAGCCACAGATCAACTCTTGTTCTTACGGCCATTACCATTATCACC  304

Query  803   CTCAGCCTCCTCAGTATTTCACCACCGCTCAGCCCAATTGGTGGGGTCCAATGGTGAGGC  862
             |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct  305   CTCAGCCTCCTCAGTATTTCACCACCGCTCAGCCCAATTGGTGGGGCCCAATGATGAGAC  364

Query  863   CGGCGTATTACGGTCCCCCTCAGCCGCAAACGCAAACGCAACCGCTTCCACCGCCATACG  922
             ||||||| ||| |||| |||||   ||   |||||||||||||||  | |  ||||||| 
Sbjct  365   CGGCGTACTACTGTCCGCCTCA---GC---CGCAAACGCAACCGC--CTA-AGCCATACC  415

Query  923   TGGAGCAACAGAACGCGAAGAAGGTGAGGAACGATGTCAATGTGCATAAAGATACAGTGA  982
             ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct  416   TGGAGCAACAGAACGCGAAGAAGGTGAGGAATGATGTCAATGTGCATAGAGATACAGTGA  475

Query  983   GGCTTGGAGTGGACGATCTCGTCCCTGGTCACCATCTAGTTTCCTTCGTCTTCGATGCCC  1042
             |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  476   GGCTTGAAGTGGACGATCTCGTTCCTGGTCACCATCTAGTTTCCTTCGTCTTCGATGCTC  535

Query  1043  TTTTCGATGGCAGTTTCACTATCACCTTCTTTGCAAAGGAGGAACCAAATTGCACCATTA  1102
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  536   TTTTCGACGGCAGTTTCACTATCACCTTCTTTGCAAAGGAGGAACCAAATTGCACCATTA  595

Query  1103  TCCCGCAGTTTCCAGAGGTTTATTCACCGACAAGATTTCATTTTCAGAAAGGTCCTGGAC  1162
             |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct  596   TCCCACAGTTTCCAGAGGTTTATTCACCCACAAGATTCCATTTTCAGAAAGGTCCTGGAC  655

Query  1163  AGAAGTTTCTGCAGCCTTCAGGGACAGGAACAGACCTGAGCTTCTTTGCTCTTGACGATC  1222
             ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct  656   AGAAGTTTCTGCAGCCTTCAGGGACAGGAACTGACCTGAGCTTCTTTGTTCTTGATGATC  715

Query  1223  TGTC-AAGACCTTTACAAGAAGATGTGTATCCGCTTGTAATATCAGCTGAGACGGTAATC  1281
             |||| || ||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  716   TGTCTAA-ACCCTTAGAAGAAGATGTGTATCCGCTTGTAATATCAGCTGAGACGATAATC  774

Query  1282  TCTCCTAATTCGATCTCAGAGCAATCATCAGTTCATAAGCAAGTCACACAAGCGGTTCTC  1341
             ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  775   TCTCCAAATTCAATCTCAGAGCAATCATCAGTTCATAAGCAAGTCACACAAGCGGTTCTC  834

Query  1342  GAGAAAGATAATGATGGATCTTTCAAAGTGAAAGTGGTGAAGCAGATTCTTTGGATTGAA  1401
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  835   GAGAAAGATAATGATGGATCTTTCAAAGTGAAAGTTGTGAAGCAGATTCTTTGGATTGAA  894

Query  1402  GGAGTTCGATATGAACTCCGTGAGTTGTATGGCTCGACCACTCAAGGTGCAGCCTCGGGA  1461
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  895   GGAGTTCGATATGAACTCCGTGAGTTGTATGGCTCGACCACTCAAGGTGCAGCCTCGGGC  954

Query  1462  TTAGAGGACAGTGGTTCGGGTAAAGAATGTGTGATCTGCATGACTGAGGCTAAGGACACG  1521
             ||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct  955   TTAGATGAGAGTGGTTCGGGTACAGAATGTGTTATCTGCATGACTGAGGCTAAGGACACG  1014

Query  1522  GCTGTACTGCCTTGCAGACATTTGTGCATGTGTAGCGACTGTGCTAAAGAATTGAGGCTT  1581
             || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1015  GCCGTGCTGCCTTGCAGACATTTGTGCATGTGTAGCGACTGTGCTAAAGAATTGAGGCTT  1074

Query  1582  CAGTCGAACAAATGTCCGATTTGTCGACAACCCATCGAAGAGCTCTTAGAGATCAAAGTG  1641
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  1075  CAGTCCAACAAATGTCCGATTTGTCGACAACCCATCGAAGAGCTCTTAGAGATCAAAATG  1134

Query  1642  AACAGTAGTGATGAACAACACTAG  1665
             ||||||||||||||||||||||||
Sbjct  1135  AACAGTAGTGATGAACAACACTAG  1158


> AT3G06145.1 | Symbols:  | unknown protein; Has 15 Blast hits 
to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:1859924-1860650 REVERSE LENGTH=727
Length=727

 Score =  758 bits (410),  Expect = 0.0
 Identities = 476/506 (94%), Gaps = 12/506 (2%)
 Strand=Plus/Plus

Query  1    ATGAATATGAAAACATCAAAGCTGAAGTTCACAAAAGAGATGATAGAGTCTATCAAAGAC  60
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  33   ATGAATATGAAAACATCAAAGATGAAGTTCACAAAAGAGATGATAGAGTCTATCAAAGAC  92

Query  61   AAGCTCTCAAGGCTCAGCTTCCTCCTCCTCTTCCTCCGACAATGCTACGGTGGCTGCGGC  120
            |||||| | ||||||||            |||||||||||||||||||||||| ||||||
Sbjct  93   AAGCTCCCGAGGCTCAG------------CTTCCTCCGACAATGCTACGGTGGTTGCGGC  140

Query  121  GACCGGACCCACTTACTCCCTTGCTCCATCGCCACCACTTCCACCCGCTTTTGGAACCTC  180
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  141  GACCGGACGCATTTACTCCCTTGCTCCATCGCCACCACTTCCACCCGCTTTTGGAACCTC  200

Query  181  TCCGACCGTCCCGTGGAGCTCCAAATTCGGGTCGGTTCAATCCTAAAACGGGTCCACACT  240
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct  201  TCCGACCGTCCCGTGGAGCTCCAGATTCGGGTCGGTTCAATTCTAAAACGGGTCCACACT  260

Query  241  CTCAAACCTGGCCGTTCCAAGAGGCTTAGACACAGAAGCATCCACAGAGCTTACGTGGAT  300
            |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||
Sbjct  261  CTCAAACCTGGCCGTTCCAAGAAGCTTAGACACAGAAGCATTCACAGAGCTTACGTTGAT  320

Query  301  GACCAGGAAGGACGTAGATGGCTGTACTACGACGACACGTGCCTACCGTACGTATGGGTG  360
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| 
Sbjct  321  GACCAGGAAGGACGTAGATGGCTGTACTACGACGACACTTGTCTACCGTACGTATGGGTT  380

Query  361  CACGAGACCGGTACAGACTTGTCGAAGATGGTGAAGCAACAGTACGTGAGTCTCGAGGAT  420
            |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  CACGAGACTGGTACGGACTTGTCGAAGATGGTGAAGCAACAGTACGTGAGTCTCGAGGAT  440

Query  421  CTGAGGGATTACTCGGAGATTAGGGTTTTTAAGGATTTACAGAGAGGTTGCGTCTCAGTT  480
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  441  CTGAGGGATTACTCGGAGATTAGGGTTTTTAAGGATTTACAGAGAGGTTGTGTCGCAGTT  500

Query  481  GAGAAAAGAGACAGAgcttctgcttt  506
            ||||||||||||||||||||||||||
Sbjct  501  GAGAAAAGAGACAGAGCTTCTGCTTT  526



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 82278693255


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5