BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg317881
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT3G10840.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1997 0.0
> AT3G10840.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:3391065-3393290 REVERSE LENGTH=1552
Length=1552
Score = 1997 bits (1081), Expect = 0.0
Identities = 1314/1422 (92%), Gaps = 33/1422 (2%)
Strand=Plus/Plus
Query 1 ATGAATTTAAACACCACATGCATCTTCTTTTTAAACCAACCAAAGCAGATTCTCTCAACA 60
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 10 ATGAATTTAAACACCACATGCATCTTCTTTTTGAACCAACCAAAGCAGACTCTCTCAACA 69
Query 61 TTCGCTTCCTTATCCTCTCTCAACGACAAGCTTAGTTTAGATTCCTC-ACGAACCCATTT 119
||| ||||||| ||||||| |||||| ||||||||| | ||||||||||
Sbjct 70 ---------TTA---TCTCTCAGCGACAAGTTTAGTTCAGATTCCTCTA-GAACCCATTT 116
Query 120 TCAGATGTCTCACCGGATCTCTGGCCAACCCTCTCGTCGTCTCATCGTCTCCAATGCTGC 179
||||||||||| | ||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 117 TCAGATGTCTCGTCAGATTTCCGGCCAACCCTCTCGCCGTCTCATCGTCTCCAATGCTG- 175
Query 180 TTCTTCTTCTCCTTCTCTCTCTGGCGGCTTCCCAGATGATGGAGCTCAGGGTAAAGAGGA 239
|||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||
Sbjct 176 --CTTCTTCTCCTTCTCTCTCTGGTGGCTTCCCAGATGCTGGAGCACATAGTAAAGAGGA 233
Query 240 GATGGAAGCTGAAACAGAACAGGATCCAATGAACTTAGCTGATCCAGACAGCTGTTTCTG 299
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 234 GATGGAAGCTGAAACAGAACAGGATCCAATGAACCTAGCTGATCCAGACAGTTGTTTCTG 293
Query 300 TGAGTTTCAAGGTGTTCATATACACCACAAAGTGTTTGATCCACAGACACTCTCTGATGA 359
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 294 TGAGTTTCAAGGTGTTCATATACACCACAAAGTGTTAGATCCACATACACTCTCTGATGA 353
Query 360 TGTTTCAACCCCAAG-CCTCCATGCTCAAGAAACACCAAAAACCGAGTTTCCGATGATTC 418
|||||||| | |||| ||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 354 TGTTTCAAACACAAGCCCT-CATGCTCAAGAAACACCAAAAACCAAGTTTCCGATGATTC 412
Query 419 TATTGCACGGCTTT-GGCGCGTCTGTGTTCTCCTGGAACAGAGTTATGAAGCC-TCTGGC 476
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||| | | ||
Sbjct 413 TATTGCACGG-TTTCGGCGCTTCTGTGTTCTCCTGGAACAGAGTTATGAAGCCAT-TAGC 470
Query 477 TCGGCTCGTCCGTTCAAAAGTTCTGGCCTTTGATAGACCCGCATTTGGCTTGACTTCTCG 536
||| ||||| ||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 471 TCGTCTCGTTAGTTCAAAAGTTCTTGCCTTTGATAGACCAGCATTTGGTTTGACTTCTCG 530
Query 537 GATTTTCCACCCGTTTAGTGGTACTACCAATGATGCAAAACCATTGAATCCCTACTCCAT 596
|||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 531 GATTTTTCACCCGTTTAGTGGTGCTACCAATGATGCAAAACCATTGAATCCCTACTCCAT 590
Query 597 GGTGTATTCCGTGCTCACTACGTTGTATTTCATCGATTTTCTTGCTGCCGATAAGGCGAT 656
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 591 GGTGTATTCCGTGCTCACTACGTTGTATTTCATCGATGTTCTTGCTGCCGATAAGGCGAT 650
Query 657 TCTTGTGGGACATTCTGCAGGTTGCCCTATAGCTGTAGATTCTTACTTTGAAGCCCCAGA 716
||||||||| |||||||| ||||||||| ||||| ||||| |||||||||||||||| ||
Sbjct 651 TCTTGTGGGGCATTCTGCTGGTTGCCCTGTAGCTTTAGATGCTTACTTTGAAGCCCCGGA 710
Query 717 GCGTGTTGCTGCTCTCATTCTCGTCGCTCCAGCTATATTCGCTCCCCGTCCTGTGGCCAC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GCGTGTTGCTGCTCTCATTCTCGTCGCTCCAGCTATATTCGCTCCCCGTCCTGTGGCCAC 770
Query 777 AACTGATGCTGGAGATAACCGTGGCAAAGAAGCTCCAACAACCAACTTTCTAGGGACTCT 836
||||||||||||||| ||||||| |||||||||||| || | ||||||||||||||||||
Sbjct 771 AACTGATGCTGGAGAGAACCGTGACAAAGAAGCTCCCACTAGCAACTTTCTAGGGACTCT 830
Query 837 AGTTGAGTTAACCAAAGGCGTTATAAGAGCAATTTTGAGAGTGGTAACGGGAATGGCGAA 896
|||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 831 AGTTGAGTTAACCAAAGGTGTTATAAGAGCAGTATTGAGAGTGGTAACGGGAATGGCGAA 890
Query 897 TATGCTGAATTCTCTCTACAAGAAAGCTTTAGCAGCTTTCCTCAGGTCTTTTCTTGGAGT 956
|||||||| |||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 891 TATGCTGAGTTCTCTCTACAAGAAAGCTTTAGCAGCTTTCCTCAGATCCTTCCTTGGAGT 950
Query 957 AATGCTGGTCAGGATGGCAATCAATAAATTTGGAGTAACAGCTGTTAAAAACGCATGGTA 1016
||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 951 AATGCTGGTGAGGATGGCAATCAATAAATTTGGAGTAACAGCTGTTAGGAACGCGTGGTA 1010
Query 1017 TGACTCGAAACAAGTGACGGATCACGTCGTCCAGGGTTATACGAAGCCTCT-AAGAGCCA 1075
|||||| ||||||||||||||||| ||||| ||||||||||| |||||||| || |||||
Sbjct 1011 TGACTCAAAACAAGTGACGGATCATGTCGTGCAGGGTTATACAAAGCCTCTTAA-AGCCA 1069
Query 1076 AGGGATGGGACAAAGCTCTAGTGGAATTCACAGTCGCTACACTAACAGATAATAATGGCT 1135
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1070 AGGGATGGGACAAAGCTCTCGTGGAATTCACGGTGGCTACACTAACAGATAATAATGGCT 1129
Query 1136 CAGAGaaaaaaaC-CCCATTGTCGAAAAGACTCCAAGAAATCAAATGTCCGGTTCTGATT 1194
||||||||||| | ||||||||| ||||| || |||||||||||||| || |||||||||
Sbjct 1130 CAGAGAAAAAA-CTCCCATTGTCTAAAAGGCTTCAAGAAATCAAATGCCCTGTTCTGATT 1188
Query 1195 GTGACGGGAGATACAGACCGGATTGTGCCAGCTTGGAACGCAGAGAGGCTGGCACGAGCC 1254
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1189 GTGACGGGAGATACGGACCGTATTGTGCCAGCATGGAACGCAGAGAGGCTGGCACGAGCC 1248
Query 1255 ATACCGGGATCGGTGTTCGAAGTAATTAAGAAATGTGGTCATCTTCCTCAAGAGGAAAAG 1314
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ATACCGGGATCAGTGTTCGAAGTAATTAAGAAATGTGGTCATCTTCCTCAAGAGGAAAAA 1308
Query 1315 CCAGATGAGTTCATATCTATTGTTGCAAAGTTTCTAGGGAATGCTTTTGGAGGGTCACAA 1374
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 CCAGATGAATTCATATCTATTGTTGCAAAGTTTCTAGGGAATGCTTTTGGAGGGTCACAA 1368
Query 1375 CAA---G---TGGACTTGAAGTTCCAAGGGATTGTATCATGA 1410
||| | ||||||||||||||||||| ||||||||||||
Sbjct 1369 CAACAAGACGTGGACTTGAAGTTCCAAGGCATTGTATCATGA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5