BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318360
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT3G15800.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1796 0.0
> AT3G15800.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr3:5345051-5346988 FORWARD LENGTH=1200
Length=1200
Score = 1796 bits (972), Expect = 0.0
Identities = 1127/1203 (94%), Gaps = 6/1203 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTATTGTGTTCCTCCTCTTGGAAAGTCTCCAACTTCACATATGGGTttctcttct 60
||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGGTTATTGTG-T--TCCTCTTCGAAAGTCTCCAACTTCACATATGGTTTTCTCTTCT 57
Query 61 ttcttcctctcgtttctcttcgtcttctctgtcctctcttcACAAACGGCCGTAGCATTC 120
|||||||| ||||||||||| ||||||||| | |||||||||||||||||||||||||||
Sbjct 58 TTCTTCCTTTCGTTTCTCTTAGTCTTCTCTATACTCTCTTCACAAACGGCCGTAGCATTC 117
Query 121 ATCGGAACATACGGTGTAAACTACGGTCGCATAGCGGACAATCTTCCGTCTCCTGACGCG 180
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 118 ATCGGAACATATGGTGTAAACTACGGTCGCATAGCGGATAATCTTCCGTCTCCTGACGCG 177
Query 181 GTAGCAACTCTCCTTAAATCAGCAAAGATTAGAAACACCCGTATCTACGACGCTGACCAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 GTAGCAACTCTCCTTAAATCAGCAAAGATTAGAAACACCCGTATCTACGATGCTGACCAC 237
Query 241 TCCGTACTCTTGGCGTTCCGCGGGACAGGGATAGAAATCATCGTTGGCTTAGGCAATGAG 300
|| |||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 238 TCTGTACTCACGGCGTTCCGCGGGACCGGGATTGAAATCATCGTTGGCTTAGGCAACGAG 297
Query 301 TTTCTTAAGGACATTAGCGTTGGAGAAGACCGAGCCATGAACTGGCTTAAGGAAAACGTG 360
||||| || |||||||| || |||||||||||||||||||||||| |||| ||||||||
Sbjct 298 TTTCTCAAAGACATTAGTGTAGGAGAAGACCGAGCCATGAACTGGATTAAAGAAAACGTC 357
Query 361 GAGCCTTTCATACGAGGTGGTACTAGAATTAGCGGTATCGCGGTGGGGAACGAGATTTTA 420
||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 358 GAGCCTTTCATACGAGGCGGTACTAAAATTAGCGGTATCGCGGTGGGTAACGAGATTTTA 417
Query 421 GGTGGAACCGATATCGGGCTTTGGGAAGCTCTCTTGCCCGCCGCTAAGAACGTTTACTCG 480
||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 418 GGTGGCACCGATATCGGGCTTTGGGAAGCTCTCTTACCCGCAGCCAAGAACGTTTACTCC 477
Query 481 GCTCTTCGCCGGCTCGGTCTTCACAATGTCGTCGAGGTGTCAAGCCCACATTCAGAGGCA 540
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 478 GCTCTTCGCCGTCTCGGTCTTCACAATGTCGTCGAGGTGTCGAGTCCACATTCAGAGGCA 537
Query 541 GTGTTTGCGAACTCGTATCCACCGTCGTCGTGTACGTTCAGGGACGATGTGGCGCCGTTT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 GTGTTTGCGAACTCGTATCCACCGTCTTCGTGTACGTTCAGGGACGATGTGGCGCCGTTT 597
Query 601 ATGAAGCCGTTGTTAGCGTTTTTTGGGCAAATTGGGTCGGCGTTCTACATTAACGCCTAC 660
|||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 598 ATGAAGCCGTTGTTAGCGTTTTTTTGGCAAATTCAGTCGCCGTTCTACATTAACGCCTAC 657
Query 661 CCTTTTCTAGCATATAAATCCGACCCGATCACAATTGACATCAATTACGCCCTTTTCGAG 720
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 CCTTTTCTTGCATATAAATCCGACCCGATTACAATTGACATCAATTACGCCCTTTTCGAG 717
Query 721 CGCAACAAAGGCATCTTGGACCCCAAAACCAAGCTTCATTACGATAACATGTTCGACGCT 780
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 CACAACAAAGGCATCTTGGACCCTAAAACCAAGCTTCATTACGATAACATGTTCGACGCC 777
Query 781 ATGGTCGATGCTTCTTATTTTGCTCTCGAAAAAGCTGGCTACACAAAAGTCCCGGTGATT 840
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATGGTCGATGCTTCTTATGCTGCTCTCGAAAAAGCTGGCTACACAAAAGTCCCGGTGATT 837
Query 841 GTTTCGGAGACGGGATGGGCATCAAAAGGTGATGCAGACGAACCAGGAGCGTCATTGAAG 900
||||||||||||||||||||||||||||| ||||||||||| || |||||||| | |||
Sbjct 838 GTTTCGGAGACGGGATGGGCATCAAAAGGCGATGCAGACGAGCCTGGAGCGTCGGTAAAG 897
Query 901 AACGCGAGAACATATAATCGGAATCTTAGGAAGCGGCTGCAGAAGAGGAAAGGAACACCG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AACGCGAGAACATATAATCGGAATCTTAGGAAGCGGCTGCAGAAGAGGAAAGGAACACCG 957
Query 961 TATAGACCAGACATGGTGGTGAGAGCTTACGTGTTTGCTCTCTTCAACGAGAATTCGAAA 1020
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 958 TACAGACCAGACATGGTGGTGAGAGCTTACGTGTTTGCTCTTTTCAACGAGAACTCGAAA 1017
Query 1021 CCAGGTCCAACTTCCGAGAGAAACTTTGGCCTTTTTAAACCCGACGGAACTATTGCCTAC 1080
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1018 CCAGGTCCCACTTCCGAGAGAAACTTTGGCCTTTTTAAACCCGATGGTACTATTGCCTAC 1077
Query 1081 GACATTGGCTTCACCGGACACAAGTCTTCTTCTGCCACACGGTGTCGTTTTAGGCCGTCT 1140
|| |||||||| ||||||| |||||| |||||||||||||||| |||||||| | |||||
Sbjct 1078 GATATTGGCTTAACCGGACTCAAGTCCTCTTCTGCCACACGGTATCGTTTTAAGTCGTCT 1137
Query 1141 CTTGTTTCGGCTTCTGTTTTCACGT-TCCT-TT-TTCTTCTTCACCGTTTGTTACACTTG 1197
|||||||| ||||||| |||||||| || | || ||||| ||||||| ||||| ||||||
Sbjct 1138 CTTGTTTCCGCTTCTGCTTTCACGTGTCTTCTTCTTCTTTTTCACCGGTTGTTCCACTTG 1197
Query 1198 TGA 1200
|||
Sbjct 1198 TGA 1200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5