BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318392
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16170.1 | Symbols: | AMP-dependent synthetase and ligase f... 2843 0.0
> AT3G16170.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr3:5476074-5480302 FORWARD LENGTH=1980
Length=1980
Score = 2843 bits (1539), Expect = 0.0
Identities = 1725/1814 (95%), Gaps = 16/1814 (1%)
Strand=Plus/Plus
Query 22 AAGAGTTTCAACTACTTGTCTTTAATTAACCATCGACTCAACCACAACACATACGCTATT 81
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 AAGAGTTTCAACTACTTGTCTTTAATTAACCATCGACTCAACCACAACTCCTACGCTATT 60
Query 82 CTCT-CT-T-CTCGTCTTCCTCGATTTCATCAGCCAGCTACCT-CTTCGTTTTCCAATTC 137
|||| || | ||| |||||||||| || || |||||| || ||||||||||||||||
Sbjct 61 CTCTCCTCTCCTCTTCTTCCTCGA--TC-CCACCCAGCT-TCTACTTCGTTTTCCAATTC 116
Query 138 TGGGTTTCGATTCTTCCAATCTAACCATCTCTTCTTCTCTTCACAGTCTGGTTCACTCAT 197
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 117 TGGGTTTCGATTCTTCCAATCTAACCA--TC-TCTTCTCTTCACAGTCTGGTTCACTCAT 173
Query 198 GGAAGTGTTTAAAGCAGCTTTTTCAGAAGGGTCTAATTCTTGTGATAGGATTGCGATTAA 257
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 174 GGAAGTGTTTAAAGCAGCTTTTTCAGAAGCGTCTAATTCTTGTGATAGGATTGCGATTAA 233
Query 258 AGCAGATGGAAACAGTTACTCTTATGGCCAGCTAACGTCCTCTGCTTTGAGAATATCTAA 317
||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 234 AGCCGATGGAAAGAGTTACTCTTATGGCCAGCTAACATCGTCTGCTTTGAGGATATCTAA 293
Query 318 ATTGTTCTCCAATGAAGATACTACAAATGGAGGT---GAAACAAAGAAGTATGAAGGGTT 374
|||||||| || || ||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 294 ATTGTTCTTAAAAGATGATACGACAAATGGAGGTCAAGAAACTAAGAAGTATGAAGGGTT 353
Query 375 TGGTAGTCTTAAAGGAGCTAGAATTGGAATTGTGGCAAAACCTTCAGCTGAGTTTGTTGC 434
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 354 TGGTAGTCTAAAAGGAGCTAGAATCGGAATTGTGGCAAAACCTTCAGCTGAGTTTGTTGC 413
Query 435 AGGAGTTCTGGGAACATGGTTTAGCGGTGGTGTAGCGGTTCCACTTGCACTCAGCTATCC 494
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AGGAGTCCTGGGGACATGGTTTAGCGGTGGTGTAGCGGTTCCACTTGCACTCAGCTATCC 473
Query 495 TGAGGCTGAACTCTTACATGTCATGAATGATTCGGATATATCTCTGTTATTGAGCACAGA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TGAGGCTGAACTCTTACATGTCATGAATGATTCGGATATATCTCTGTTATTGAGCACAGA 533
Query 555 GGACCACAGTGAAACTATGAAAACTATCGCAGCAAAGAGTGGTGCTCAATTTCATCTTAT 614
|||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 534 GGACCATAGTGAAACTATGAAAACCATCGCAGCAAAGAGTGGTGCTCGATTTCATCTTAT 593
Query 615 TCCTCCTGTTGTCACCTCAACTTCGGAAACTGTTGCTCGCAATCAGTTTCAGGATGATAG 674
|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 594 TCCTCCTGTTGTTAACTCAACTTCGGAAACTGTTGCTTGCAATCAGTTTCAGGATGACAG 653
Query 675 TTTTGAAGCAGAAGGAAAGTTTCTAGATGATCCAGCATTGATTGTCTACACTAGTGGTAC 734
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 654 TTTTGAAGCAGAAGGAAAGTTTCTAGATGATCCAGCATTGATCGTCTACACTAGTGGTAC 713
Query 735 AACTGGTAAGCCAAAAGGAGTTGTCCATACCCACAACAGCATCAATTCCCAGGTTAGAAT 794
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 714 AACTGGTAAGCCAAAAGGAGTTGTTCATACTCACAACAGCATCAATTCCCAGGTTAGAAT 773
Query 795 GCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTATCCACTGCCTCCCACTACA 854
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 774 GCTCACTGAAGCTTGGGAGTACACATCTGCTGATCATTTTCTCCACTGCCTCCCACTACA 833
Query 855 TCATGTTCATGGGCTTTTCAACGCTTTATTTGCTCCTCTTTACGCACGGTCTTTGGTGGA 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TCATGTTCATGGGCTTTTCAACGCTTTATTTGCTCCTCTTTACGCACGGTCTTTGGTGGA 893
Query 915 GTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCACA 974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GTTTTTGCCCAAATTTAGTGTTAGTGGAATCTGGCGTAGATGGCGTGAATCATATCCGGT 953
Query 975 GAATGATGAGAAAAAC-AACGACGCTATAACTGTATTCACTGGAGTTCCAACCATGTATA 1033
||||||||| |||||| |||||| | ||||||||||| |||||||||||||||||||| |
Sbjct 954 GAATGATGA-AAAAACCAACGACTCCATAACTGTATTTACTGGAGTTCCAACCATGTACA 1012
Query 1034 CTCGGTTGATACAAGGTTATGAAGCAATGGATAAAGAGATGCAGGATTCGAGCGCTTTTG 1093
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1013 CTCGGTTGATACAAGGTTATGAAGCAATGGATAAAGAGATGCAGGACTCGAGCGCTTTTG 1072
Query 1094 CTGCACGGAAGCTTCGCCTAATGATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGC 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 CTGCACGGAAGCTTCGCCTAATGATGTCTGGCTCCTCTGCTCTCCCTCGACCTGTCATGC 1132
Query 1154 ATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAGAGATATGGCATGACTGAGTTTG 1213
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1133 ATCAATGGGAAAGTATCACAGGTCATCGTCTTTTGGAAAGATATGGCATGACTGAGTTTG 1192
Query 1214 TAATGGCAATGTCAAACCCCTTACGGGGTGCACGAAAGGCAGGTACTGTCGGCAAACCGC 1273
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1193 TAATGGCAATGTCAAACCCCTTACGGGGTGCACGAAATGCAGGTACTGTCGGCAAACCGC 1252
Query 1274 TTCCTGGTGTGGAGGCTATAATTAAAGAAGATGAGAATGATTCAAATGGAGTGGGCGAGA 1333
|||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||| ||||
Sbjct 1253 TTCCTGGTGTGGAGGCTAAAATAAAAGAAGATGAAAATGACGCAAATGGAGTGGGTGAGA 1312
Query 1334 TTTGTGTTAAAAGCCCATCTTTGTTCAAGGAGTACTGGAATCTTCCAGAAGTGACTAAAG 1393
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1313 TATGTGTTAAAAGCCCATCTTTGTTCAAGGAGTACTGGAATCTTCCAGAGGTGACTAAAG 1372
Query 1394 AATCATTTACGGAAGATGGATACTTTAAGACAGGAGATGCTGGTAGAGTGGATGAGGATG 1453
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1373 AATCATTTACGGAAGATGGATACTTCAAGACGGGAGATGCTGGAAGAGTGGATGAGGATG 1432
Query 1454 GATATTACGTGATTCTTGGACGGAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGT 1513
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1433 GATATTACGTGATTCTAGGACGTAATAGCGCTGACATTATGAAGGTTGGAGGATACAAGT 1492
Query 1514 TATCTGCCTTAGAAATTGAATCAACCCTTCTCGAGCACCCTACGGTTGCAGAATGTTGCG 1573
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1493 TATCTGCCTTAGAAATCGAATCAACCCTTCTCGAGCACCCTACTGTTGCAGAATGTTGCG 1552
Query 1574 TGTTGGGGTTAACAGACAAAGATTATGGAGAAGCTGTTACTGCGATAATTGTAGCAGAGA 1633
||||||||||||||||||| || ||||||||||| || |||||||||||| |||||||||
Sbjct 1553 TGTTGGGGTTAACAGACAACGACTATGGAGAAGCCGTGACTGCGATAATTATAGCAGAGA 1612
Query 1634 GTGCAGTGAAGAAAAGAAGAGAAGATGAGTCAAAACCTGTAATGACCTTAGAAGAACTCT 1693
|||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 1613 GTGCAGCAAAGAAGAGAAGAGAGGATGAGTCAAAACCTGTAATAACCTTAGAAGAACTGT 1672
Query 1694 GCGGTTGGGCTAAAGACAAGCTTGCTCCTTACAAGCTACCAACACGATTGCTGATATGGG 1753
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1673 GCGGTTGGGCTAAAGACAAGCTTGCTCCTTACAAGCTACCAACAAGATTGCTGATATGGG 1732
Query 1754 AGAGCTTGCCCCGCAACGCCATGGGAAAGGTGAACAAAAAAGAGCTAAAGAAATCTCTTG 1813
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1733 AGAGCTTGCCTCGCAACGCCATGGGAAAGGTGAACAAAAAAGAGCTAAAGAAATCTCTGG 1792
Query 1814 ATAATCAAGAATAA 1827
| ||||||||||||
Sbjct 1793 AAAATCAAGAATAA 1806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5