BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318925
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21870.1 | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703866-770... 933 0.0
> AT3G21870.1 | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703866-7704829
REVERSE LENGTH=710
Length=710
Score = 933 bits (505), Expect = 0.0
Identities = 589/630 (93%), Gaps = 4/630 (1%)
Strand=Plus/Plus
Query 1 ATGTTAACCGTAGCCGGAGACGATGAACTAGACCCGGTCGTGGGACCAGAGCCGCCAACG 60
|||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 17 ATGTTAACCGCAGCCGGAGACGATGAACTGGACCCGGTCGTGGGACCAGAATCGGCAACG 76
Query 61 GAAGCAGCCACTCCAAGAGTGTTGACTATAATCTCCCATGTGATGGAGAAGCTCGTGGCA 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 77 GAAGCAGCCACTCCAAGAGTGCTGACTATAATCTCCCATGTGATGGAGAAGCTCGTGGCA 136
Query 121 CGAAACGAGTGGTTAGCTAAACAAACTACGGGATTCGGGAAGAGCTTGGAGGCGTTTCAC 180
|||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 137 CGAAACGAGTGGTTAGCTAAGCAAACTAAGGGATTTGGGAAGAGCTTGGAGGCGTTTCAC 196
Query 181 GGTGTCAGAGCACCAAGCATAAGTATAGC-AAAGTACCTTGAGAGGATATACAAGTACAC 239
|| || ||||| || |||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 197 GGCGTGAGAGCGCCGAGCATAAGTATAGCTAAA-TACCTTGAGAGGATATATAAGTACAC 255
Query 240 AAAATGTAGCCCGGCGTGTTTCGTTGTTGGGTATGTGTACATAGACCGGTTGGCTCATAG 299
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 AAAATGTAGCCCGGCATGTTTCGTTGTTGGGTATGTGTACATAGACCGGTTGGCTCATAA 315
Query 300 GCATCCTGGTTCTTTGGTTGTCTCCTTGAATGTTCATAGACTCCTCGTCACTTGTGTCAT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GCATCCTGGTTCTTTGGTTGTCTCCTTGAATGTTCATAGACTCCTCGTCACTTGTGTCAT 375
Query 360 GATTGCTTCCAAGATACTAGACGACGTGCACTACAACAACGAGTTCTATGCTCGGGTTGG 419
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 376 GATTGCTGCCAAGATACTAGATGACGTGCACTACAACAACGAGTTCTATGCTCGGGTTGG 435
Query 420 AGGTGTGAGCAATGCGGACCTGAACAAAATGGAGTTAGAGCTTCTATTTCTCCTTGACTT 479
||| || |||||||| ||| |||||||||||||||| |||||||| ||||| ||||||||
Sbjct 436 AGGCGTAAGCAATGCAGACTTGAACAAAATGGAGTTGGAGCTTCTCTTTCTTCTTGACTT 495
Query 480 CAGAGTGACCGTGAGTTTTAGAGTTTTTGAGAGCTATTGCTTTCACCTCGAAAAAGAGAT 539
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 496 TAGAGTTACTGTGAGTTTTAGAGTTTTCGAGAGCTATTGCTTTCACCTCGAAAAAGAGAT 555
Query 540 GTTACTAAACGGCGACGTTTCTTCCCTCAAAAATATTCAACCATTGCAAGAAAGTCTCTC 599
| |||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 556 GCAACTAAACGACGCCGTTTCTTCCCTCAAAGATATTCAACCAATGCAAGAAAGTCTCTC 615
Query 600 TCCTTCATCCT-CTTTATCATCTTTATATG 628
||| |||| | ||||||||||||||||||
Sbjct 616 TCCAGCATC-TACTTTATCATCTTTATATG 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5