BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319530
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15890.1 | Symbols: MEE14 | maternal effect embryo arrest 14... 859 0.0
> AT2G15890.1 | Symbols: MEE14 | maternal effect embryo arrest
14 | chr2:6920369-6922025 REVERSE LENGTH=1486
Length=1486
Score = 859 bits (465), Expect = 0.0
Identities = 567/613 (92%), Gaps = 20/613 (3%)
Strand=Plus/Plus
Query 1 ATGATAAAATCAGTGACTCTTCGCTCGTTTCATCTCCCTATTGAGTTTAACGACACCAAA 60
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 48 ATGATAAAATCAGTGACTCTTCGTTCGTTTCATCTCCCAATTGAGTTTAACGACACCAAA 107
Query 61 TTCGCCGCACCGTCGTT-TCCCCCCGCGAGATCCTTCCCGGTGGTTCGTTGTTCAAGCAC 119
|||| | || || | || | || |||||||||||||||||||||||||||||||||||
Sbjct 108 TTCGTCTCA-CGGCCTTGTTTCCTGGCGAGATCCTTCCCGGTGGTTCGTTGTTCAAGCAC 166
Query 120 CAGAGACGTCCCTAAGCTTGAACTCTTCAGCCGCGGAAAATTCGACCGGATTCTTCAAGA 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 167 CAGAGACGTACCTAAGCTTGAACTCTTCAGCCGCGGAAAATTCGACCGGATTCTTCAAGA 226
Query 180 TCCGCCACTAATTGAAAAAGCCGAAACCGAACTCTCAGATTACTGTTCGACGCTTGAAGG 239
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 227 TCCGCCACTTATTGAAAAAGCCGAATCCGAACTCTCAGATTACTGTTCGACGCTTGAAGG 286
Query 240 TGATGATTCTTACAGTTGCTGGAGAGCTTACTTTGAACTCAAAGATCTCGAAAGAGAGAA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TGATGACTCTTACAGTTGCTGGAGAGCTTACTTTGAACTCAAAGATCTCGAAAGAGAGAA 346
Query 300 GCCAAAGGTTGAAGTTGAGAATTTGATTTTGCAAACAGGCGGTGTGAAATCGCTAATCGG 359
||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||
Sbjct 347 GCCAAAGGTTGAAGTTGAGAATTTGATTTTGCAAACAGGTGGTTTGAAATCGTTAATCGG 406
Query 360 GTGTTTACATGGAGTTGCTTCAATGGAGAAAGATAACAAAACCAAGAATGGTTTA-A--- 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 407 GTGTTTACATGGAGTTGCTTCAATGGAGAAAGATAACAAAACCAAGAATGGTTTACATGT 466
Query 416 A---------T-AGA--GAGA-AA-GGAATGAAATTGCATATTCATATTCCTGATGGTTT 461
| | ||| |||| || |||||||| ||||| ||||||||||||||||||||
Sbjct 467 AGGAGAAGAATCAGATAGAGAGAAAGGAATGAATTTGCACATTCATATTCCTGATGGTTT 526
Query 462 ACCAAAATCTGAACAAGAATTGGAGGAAGAAGAGAAATCGAAAATGCCGGATTCCGCTTT 521
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 527 ACCAAAATCTGAACAAGAGTTGGAGGAAGAAGAGAAATCGAAAATGCCGGATTCAGCTTT 586
Query 522 CACTAGGTTGCTTAGAACTAAAGGAACTATCCCTGCTTGGTTCTCTCACGTTCCTGATCA 581
|||||| |||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 587 CACTAGATTGCTTAGAAGTAAAGGAACTATCCCTGCTTGGTTCTCTCACGCTCCTGACCA 646
Query 582 CGAAACTGACTGA 594
|||||| ||||||
Sbjct 647 CGAAACCGACTGA 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5