BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319534
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT2G15910.1 | Symbols: | CSL zinc finger domain-containing pro... 876 0.0
> AT2G15910.1 | Symbols: | CSL zinc finger domain-containing protein
| chr2:6932406-6935424 REVERSE LENGTH=1706
Length=1706
Score = 876 bits (474), Expect = 0.0
Identities = 615/677 (91%), Gaps = 34/677 (5%)
Strand=Plus/Plus
Query 430 AATAACCCGGTGTACAGTCCATGTTCAGACACTCAAATTAGCAAAGGAGATGGTTTCACC 489
||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 524 AATAATCCGGTGTACAGTCCATGTTCAGATACACAAATAAGCAAAGGAGATGGTTTCACC 583
Query 490 ATTGGTATTGCCATCTCCAGCAAAGAAGCTTTCTTTCTTGACCAAGTCCAGCTTTCTCCT 549
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 584 ATTGGTATTGCCATCTCTAGCAAAGAAGCTTTTTTTCTTGACCAAGTCCAGCTTTCTCCC 643
Query 550 TGTGATTCTCGTCTTGGTTTAGCTGCGAAAATGGCGCAGCTCGCGCTTTTTAGACCAAAG 609
|||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 644 TGTGATACTCGTCTCGGTTTAGCTGCGAAAATGGCGCAGCTTGCGCTTTTTAGACCTAAG 703
Query 610 GTTGACGAGATCTCTCTTCTCTCCATCGACACAAGTAAGTTTAACCCGAGTGAAGCAGGA 669
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GTTGACGAGATCTCTCTTCTCTCCATCGACACAAGTAAGTTTAACCCGAGTGAAGCAGGT 763
Query 670 GGATTCATGGTGGGATTCGCAGGCTCAAAGTATGCAGCAAGATC-TAGTCCTGTGAAGGT 728
|||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||
Sbjct 764 GGATTCATGGTGGGATTCGCGGGCTCAAAATATGCAGCAAGATCATA-TCCTGTGAAGGT 822
Query 729 CGCAGATGGAAGC-A-AC-A-CA-A----TCACA---G--CT----TT----C--A--CA 762
|||||||||||| | || | || | ||||| | | || | | |
Sbjct 823 TGCAGATGGAAGCAACACAATCACAGCTTTCACACTTGTAATGAAATTAACCCTAAGCCC 882
Query 763 CTT-GTATTGGAATTTCAGAAGGGAGTGTTGCAGAATCTGTTCTGGAAGAGCTTCGGATG 821
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 CTTGGTACTGGAATTTCAGAAGGGAGTGTTGCAGAATCTGTTCTGGAAGAGCTTCGGATG 942
Query 822 CGATTCGTGCAAAGGAATAGGATCTTCTTCTTCTTCTGTGTGTCTGAATGGGACGGATTG 881
||||| ||||||||||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 943 CGATTTGTGCAAAGGAACAGGATCTTCTTCTTCT---GTGTGCCTGAATGGGACGGATTG 999
Query 882 CGCGGTTCCAACATCAAAGTGCAAGGCTAATGGAGGTGAAGCTAACTGCAACATTGGAAT 941
|||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1000 CGCGGTTCCAACTTCAAAGTGTAAGGCTAATGGAGGTCAAGCTAACTGCAACATTGGAAT 1059
Query 942 TCAGGTGGCGTTTTCGGGAACAGACAAGAA-CCTCGAGTCATTGAACACTTGGTACGAGG 1000
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1060 TCAGGTCGCGTTTTCGGGAACAGACA-GAAACCTCGAGTCATTGAACACTTGGTACGAGG 1118
Query 1001 TAAACAACCTGAGGCAGTACTCGCTTACTGACCTCTACGCAAATGCTGTAGATTCTCTGA 1060
||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1119 TAAACAATCTGAGGCAGTACTCGCTTACTGACCTCTACGCAAACGCTGTAGACTCTCTGA 1178
Query 1061 GTGGTGGGCTGCTGTAA 1077
|||||||||||||||||
Sbjct 1179 GTGGTGGGCTGCTGTAA 1195
Score = 385 bits (208), Expect = 6e-106
Identities = 218/223 (98%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 1 ATGTCGTACGACGATGTTGAGATAGAGGATATGGAGTGGAACGAAGAGATTCAAGCGTAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 ATGTCGTACGACGATGTTGAGATAGAGGATATGGAGTGGAACGAAGAGATTCAAGCGTAC 151
Query 61 ACGTATCCTTGTCCTTGTGGCGACTTGTTTCAGATTACGAAAGAAGATCTCCGGCTCGGC 120
|||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 152 ACGTATCCTTGTCCTTGTGGTGATTTGTTCCAGATTACGAAAGAAGATCTCCGGCTCGGC 211
Query 121 GAAGAGATCGCGAATTGCCCAAGTTGTTCGCTTTATATCACCGTCATCTACAATATGGAA 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 212 GAAGAGATCGCGAATTGCCCAAGTTGTTCTCTTTATATCACCGTCATCTACAATATGGAA 271
Query 181 GATTTTCAAAACGATACTAAGAAGAATAACGAACCTAAAACTC 223
||||||||||||||||| |||||||||||||||||||||||||
Sbjct 272 GATTTTCAAAACGATACGAAGAAGAATAACGAACCTAAAACTC 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5