BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319764 Length=627 Score E Sequences producing significant alignments: (Bits) Value AT2G18120.1 | Symbols: SRS4 | SHI-related sequence 4 | chr2:787... 811 0.0 AT1G52942.1 | Symbols: | Pseudogene of AT2G18120; SRS4 (SHI-RE... 473 7e-133 > AT2G18120.1 | Symbols: SRS4 | SHI-related sequence 4 | chr2:7876615-7877681 REVERSE LENGTH=776 Length=776 Score = 811 bits (439), Expect = 0.0 Identities = 569/629 (90%), Gaps = 20/629 (3%) Strand=Plus/Plus Query 1 ATGGCTGGGATAGGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAACTGG 60 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 16 ATGGCTGGGACAGGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAATTGG 75 Query 61 GTTTGGTACAGAA-ACGCCAATAATAACCCAAGTACGAGCCACAACAATCAGATATGGCA 119 |||||||||| || || |||||||||||| |||||||||||||||||||||||||||||| Sbjct 76 GTTTGGTACA-AACACACCAATAATAACCTAAGTACGAGCCACAACAATCAGATATGGCA 134 Query 120 GCAGCCAAGCCTGGATCTATATCCGGGTCAGATCGACGTCTGTGATTTGACCACGTCATC 179 |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 135 GCAGCCAAGCCTCGATCTATATCCGGGTCAGATCGACGTCTGTGATATGACCACGTCATC 194 Query 180 CAGATCCCTAACCATAAGCTGTCAAGACTGTGGAAACCAAGCCAAGAAAGGGTGCACGCA 239 ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 195 GAGATCTCTAACGATAAGCTGTCAAGAGTGTGGAAACCAAGCCAAGAAAGGGTGCACGCA 254 Query 240 TGGACGGTGTAGAACTTGCTGCAAGAACCACGGGCTCCACTGTCCTACTCACGTTAGGAG 299 || |||||||||||||||||||||| |||| ||||||||||| || ||||| ||||| Sbjct 255 CGGGCGGTGTAGAACTTGCTGCAAGAGTAACGGACTCCACTGTCCCACCCACGTGAGGAG 314 Query 300 CACGTGGATCCCCATCGCCAAACGCCGCGAGCGGCAGCAGCAGATACAGACGCCAATCTC 359 ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| ||| Sbjct 315 CACGTGGATCCCCATTGCCAAACGCCGTGAGCGGCAGCAGCAGCTACAGACGCCAACCTC 374 Query 360 CAACCGAAATGGCGGTGGCGACAGAGTTGGGAACATCCCAACACCGTATAGAGAGATTGA 419 ||||| || |||||| ||| |||||||||||| ||||||||| ||| | Sbjct 375 CAACCCAACCGGCGGTAGCGGCAGAGTTGGGAA------------GTATAGAGACATTAA 422 Query 420 TCAACCGGCTA----A--CTCATCAGGGTTAGAGATGGGAGAGGCAACATTTCCAGATGA 473 ||||| |||| | ||||||||||||||||||||||||| ||| |||||||||||| Sbjct 423 TCAACATGCTACTTTAGACTCATCAGGGTTAGAGATGGGAGAGACAAGATTTCCAGATGA 482 Query 474 AGTGAGCTCGGATGCACTTTTCCGGTGCGTCAGAATGAGTGGTACCGATGATGGAGAGGG 533 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 483 AGTGAGCTCGGATGCACTTTTCCGATGCGTCAGAATGAGTGGTACCGATGATGGAGAGGG 542 Query 534 CCAATACGCATACCAAACGACGGTGGGCATAGCTGGCCATCTCTTTAAGGGAATTCTATA 593 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 543 CCAATACGCATACCAAACGACGGTGGGCATAGCTGGTCATCTCTTTAAAGGAATTCTCTA 602 Query 594 TAACCAAGGTCCGGAAAACATGTCCATGC 622 |||||||||||| ||||||| |||||||| Sbjct 603 TAACCAAGGTCCAGAAAACAAGTCCATGC 631 > AT1G52942.1 | Symbols: | Pseudogene of AT2G18120; SRS4 (SHI-RELATED SEQUENCE 4) | chr1:19724222-19724588 FORWARD LENGTH=367 Length=367 Score = 473 bits (256), Expect = 7e-133 Identities = 328/361 (91%), Gaps = 11/361 (3%) Strand=Plus/Plus Query 13 GGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAACTGGGTTTGGTACAGA 72 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 GGATCATCAAGAAACAACGAAGAAGACAATCAACAAAACACAAATTGGGTTTGGTACAGA 60 Query 73 AACGCCAATAATAACCCAAGTACGAGCCACAACAATCAGATATGGCAGCAGCCAAGCCTG 132 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGCACCAATAATAACCCAAGTACGAGCCACAACAATCAGATATGGCAGCAGCCAAGCCTC 120 Query 133 GATCTATATCCGGGTCAGATCGACGTCTGTGATTTGACCACGTCATCCAGATCCCTAACC 192 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 121 GATCTATATCCGGGTCAGATCGAGGTCTGTGATTTGACCACGTCATCGAGATCTCTAACG 180 Query 193 ATAAGCTGTCAAGACT---G--T--GGAAACCAAGCCAAGAAAGGGTGCACGCATGGACG 245 |||||||||||||||| | | ||||||||||||||||||||||||||||| || || Sbjct 181 ATAAGCTGTCAAGACTCAAGAGTATGGAAACCAAGCCAAGAAAGGGTGCACGCACGGGCG 240 Query 246 GTGTAGAACTTGCTGCAAGAACCACGGGCTCCACTGTCCTACTCACGTTAGGAGCACGTG 305 ||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||| Sbjct 241 TTGTAGAACTTGCTGCAAGAGTCACGGGCTCCACTGTCCCACCCACGTGAGGAGCACGTG 300 Query 306 GATCCCCATCGCCAAACGCCGCGAGCG-GCA-GCAGCAGATACAGACGCCAATCTCCAAC 363 ||||||||| ||||||||||| ||| | ||| | || | |||||||||||| ||||||| Sbjct 301 GATCCCCATTGCCAAACGCCGTGAG-GAGCACGT-GCTGCTACAGACGCCAACCTCCAAC 358 Query 364 C 364 | Sbjct 359 C 359 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30240956494 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5