BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg320706
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29420.1 | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-tr... 983 0.0
AT1G74590.1 | Symbols: ATGSTU10, GSTU10 | glutathione S-transfe... 89.8 3e-17
> AT2G29420.1 | Symbols: ATGSTU7, GST25, GSTU7 | glutathione S-transferase
tau 7 | chr2:12617936-12618899 REVERSE LENGTH=887
Length=887
Score = 983 bits (532), Expect = 0.0
Identities = 614/654 (94%), Gaps = 4/654 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGAGAGATCAGATTCAGAGGAAGTGAAGCTTCTGGGAATGTGGGCGAGTCCTTTT 60
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 29 ATGGCGGAGAGATCAAATTCAGAGGAAGTGAAGCTTTTGGGAATGTGGGCGAGTCCTTTT 88
Query 61 AGTCGTAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCTTACGAATT-CTCAGAGGA 119
||||| ||||||||||||||||||||||||||||||||||| || || || || ||| |
Sbjct 89 AGTCGGAGGATTGAGATTGCTCTTACGCTTAAAGGTGTTTCGTATGAGTTCCT-GGAGCA 147
Query 120 AGATATCACTAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTTATAAGATGATTCC 179
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 148 AGATATCACAAACAAGAGCTCTTTGTTGCTTCAATTGAATCCGGTTCATAAGATGATTCC 207
Query 180 GGTTCTTGTTCATACTGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAATATATTGA 239
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 208 GGTTCTTGTTCATAATGGTAAACCGATTTCTGAATCACTTGTGATTCTTGAGTATATTGA 267
Query 240 TGAGACTTGGAGAGACAATCCGATTCTGCCTCAAGATCCGTATGAGA-AAGCTATGGCTC 298
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 268 TGAGACTTGGAGAGACAATCCGATTCTTCCTCAAGATCCGTATGAGAGAA-CTATGGCTC 326
Query 299 GATTCTGGGCTAAATTTGTTGATGAACAGATTTATGTGACGGCGATGAAAGTGGTGGGGA 358
|||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 327 GATTCTGGTCTAAATTCGTCGATGAACAGATTTATGTGACGGCGATGAAAGTTGTGGGGA 386
Query 359 AGATCGGAGAAGAGAGAGATGCGGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTGG 418
||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 387 AGACCGGAAAAGAGAGAGATGCTGTGGTTGAAGCGACGAGAGATTTGTTGATGTTTTTGG 446
Query 419 AGAAAGAGCTTGTTGGGAAAGAtttttttGGAGGGAGAAGTTTGGGGTTTGTAGATATTG 478
|||||||||||||||||||||||||| | || |||| |||||| |||||||| |||||||
Sbjct 447 AGAAAGAGCTTGTTGGGAAAGATTTTCTCGGTGGGAAAAGTTTAGGGTTTGTGGATATTG 506
Query 479 TGGCCACGTTGGTGGCGTTTTGGCTGATGAGGACGGAGGAGATCGTCGGAGTTAAGGTTG 538
|||| || ||||||||||||||||||||||| ||||||||||||||||| || ||||| |
Sbjct 507 TGGCGACTTTGGTGGCGTTTTGGCTGATGAGAACGGAGGAGATCGTCGGGGTAAAGGTGG 566
Query 539 TTCCGGTGGAGAAGTTCCCGGAGATACATAGATGGGTTAAGAATTTGTTGGGAAATGATG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 567 TTCCGGTGGAGAAGTTCCCGGAGATACATAGATGGGTTAAGAATTTGTTGGGTAATGATG 626
Query 599 TTATCAAGAAATGTATTCCTCCTGAAGATGAGCATCTCCAGTACATCAGAGCTC 652
||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 627 TTATCAAGAAATGTATTCCTCCTGAAGATGAGCATCTTAAGTACATTAGAGCTC 680
> AT1G74590.1 | Symbols: ATGSTU10, GSTU10 | glutathione S-transferase
TAU 10 | chr1:28023627-28024726 REVERSE LENGTH=1019
Length=1019
Score = 89.8 bits (48), Expect = 3e-17
Identities = 86/104 (83%), Gaps = 4/104 (4%)
Strand=Plus/Plus
Query 149 TTCAATTGAATCCGGTTTATAAGATGATTCCGGTTCTTGTTCAT-ACTGGTAAACCGA-T 206
||||| | || ||||| | |||| |||||| |||||||| ||| | ||| ||||| | |
Sbjct 203 TTCAACTCAACCCGGTGCACAAGAAGATTCCTGTTCTTGTCCATGA-TGGGAAACC-AGT 260
Query 207 TTCTGAATCACTTGTGATTCTTGAATATATTGATGAGACTTGGA 250
|||||||||||||||||||||||||||| |||||||| ||||
Sbjct 261 GGCTGAATCACTTGTGATTCTTGAATATATCGATGAGACGTGGA 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5