BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321280

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G35658.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   407    3e-113


> AT2G35658.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT4G16840.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr2:14990326-14990931 REVERSE LENGTH=606
Length=606

 Score =  407 bits (220),  Expect = 3e-113
 Identities = 244/256 (95%), Gaps = 0/256 (0%)
 Strand=Plus/Plus

Query  1    ATGCGTCGATCGGCGAGCGCCTCCATAGTTTCCGACCAACTCTCAGCGAATTCTCCGTCA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  26   ATGCGTCGATCGGCGAGCGCCTCCATAGTTTCCGACCAACTCTCAGCGAATTCTCCTTCG  85

Query  61   CCATCACCATCTCCGCCGCGAATTAAAACCGCCGCAGATTCAGATGATAGCCACCTTCTT  120
            |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  86   CCATCACCATCTCCGCCGCGAATTAAAACCTCCGCAGATTCGGATGATAGCCACCTTCTT  145

Query  121  TTACCTAGGTACGATCCCAACTCTCATCCCGGGAAAAAGAACAAATCGCGATTCAGATCC  180
            || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  146  TTGCCTAGGTACGATCCCAACTCTCATCCCGGGAAGAAGAACAAATCGCGATTCAGATCC  205

Query  181  GCCGAAAACGCTATCCATTTCATTCCAATCGTACTCATTCTCTGCGCCGTTATACTCTGG  240
            ||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| |||
Sbjct  206  GCCGAGAACGCTATCCATTTCATTCCGATCGTACTCATTCTCTGCGCAGTCATACTTTGG  265

Query  241  TTGTTTTCGAATCCAG  256
             |||||||||||||||
Sbjct  266  ATGTTTTCGAATCCAG  281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5