BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg321280 Length=276 Score E Sequences producing significant alignments: (Bits) Value AT2G35658.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 407 3e-113 > AT2G35658.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:14990326-14990931 REVERSE LENGTH=606 Length=606 Score = 407 bits (220), Expect = 3e-113 Identities = 244/256 (95%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1 ATGCGTCGATCGGCGAGCGCCTCCATAGTTTCCGACCAACTCTCAGCGAATTCTCCGTCA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 26 ATGCGTCGATCGGCGAGCGCCTCCATAGTTTCCGACCAACTCTCAGCGAATTCTCCTTCG 85 Query 61 CCATCACCATCTCCGCCGCGAATTAAAACCGCCGCAGATTCAGATGATAGCCACCTTCTT 120 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 86 CCATCACCATCTCCGCCGCGAATTAAAACCTCCGCAGATTCGGATGATAGCCACCTTCTT 145 Query 121 TTACCTAGGTACGATCCCAACTCTCATCCCGGGAAAAAGAACAAATCGCGATTCAGATCC 180 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 146 TTGCCTAGGTACGATCCCAACTCTCATCCCGGGAAGAAGAACAAATCGCGATTCAGATCC 205 Query 181 GCCGAAAACGCTATCCATTTCATTCCAATCGTACTCATTCTCTGCGCCGTTATACTCTGG 240 ||||| |||||||||||||||||||| |||||||||||||||||||| || ||||| ||| Sbjct 206 GCCGAGAACGCTATCCATTTCATTCCGATCGTACTCATTCTCTGCGCAGTCATACTTTGG 265 Query 241 TTGTTTTCGAATCCAG 256 ||||||||||||||| Sbjct 266 ATGTTTTCGAATCCAG 281 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12667472748 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5