BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321490

Length=348
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G37870.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   516    6e-146


> AT2G37870.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr2:15859239-15859907 
FORWARD LENGTH=573
Length=573

 Score =  516 bits (279),  Expect = 6e-146
 Identities = 327/350 (93%), Gaps = 4/350 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGTGTTGTAGGTTTGTTGTAGTGGCTTTGATGAGTCTTCTCATCACA-TTGGCTTC  59
            ||||||||||||| |||||||| ||||||||||||||||||||| ||| || || |||||
Sbjct  42   ATGAAGTGTTGTAAGTTTGTTGCAGTGGCTTTGATGAGTCTTCTGATCTCACTT-GCTTC  100

Query  60   CACTGAGGCAGTC-GGAGAGTGTGGTCGAATGCCAATTAATCAAGCCGCGGCTAGCCTAA  118
            |  |||||| | | || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct  101  CGTTGAGGC-GGCAGGTGAGTGTGGTCGCATGCCAATTAATCAAGCCGCGGCTAGCCTAA  159

Query  119  GCCCGTGTTTGCCTGCTACAAAGAACCCGAGGGGTAAAGTTCCACCGGTTTGTTGTGCCA  178
            ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct  160  GCCCGTGTTTGCCTGCTACAAAGAACCCGAGGGGTAAGGTTCCACCGGTTTGCTGTGCCA  219

Query  179  AAGTGGGTGCTCTCATTAGAACCAATCCTCGCTGTCTTTGTGCTGTCATGCTCTCTCCTT  238
            |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  220  AAGTTGGTGCTCTCATTAGAACCAATCCTCGTTGTCTTTGTGCTGTCATGCTCTCTCCTT  279

Query  239  TAGCCAAGAAAGCTGGAATCAATCCTGGTATCGCAATCGGTGTTCCTAAACGCTGTAACA  298
            |||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct  280  TAGCAAAGAAAGCCGGAATCAATCCTGGAATCGCAATCGGCGTTCCTAAACGCTGTAACA  339

Query  299  TCCGCAACCGCCCTGCTGGCAAGCGATGTGGACGCTACATTGTTCCATGA  348
            |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  340  TCCGAAACCGCCCTGCTGGCAAGCGATGTGGACGTTACATTGTTCCATGA  389



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16286750676


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5