BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321492
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37890.1 | Symbols: | Mitochondrial substrate carrier famil... 1245 0.0
AT3G53940.1 | Symbols: | Mitochondrial substrate carrier famil... 536 1e-151
> AT2G37890.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr2:15861688-15864009 REVERSE LENGTH=1503
Length=1503
Score = 1245 bits (674), Expect = 0.0
Identities = 744/778 (96%), Gaps = 3/778 (0%)
Strand=Plus/Plus
Query 1 ATGAATGTTGACGCTAGAGTCGGTGTTGCGGTGGATGGAGCTCAGAGTGCTCTTAACACT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 161 ATGAATGTTGACGCTAGAGTCGGTGTTGCGGTCGATGGAGCTCAGAGTGCTCTTAACACT 220
Query 61 GCAACCACTGTTCATAGTAGCGTCG---TGCCTCAGATTAAGCCGCAGGCGAAGCTAGGC 117
||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||
Sbjct 221 GCAACCACTGTTCATAGTAGCGTCGTCATGACGCAGATTAAGCCGCAGGCAAAGCTAGGA 280
Query 118 ACCTTCCAGAATCTCCTCGCTGGAGGTATTGCCGGCGCCTTTAGCAAGACCTGTACCGCT 177
||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 281 ACCTTCCAGAATCTCCTCGCTGGTGGTATTGCCGGCGCCATTAGCAAGACATGTACCGCT 340
Query 178 CCTCTTGCTCGCCTCACCATCTTGTTTCAGTTGCAAGGCATGCAATCAGAAGGTGCAGTG 237
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 341 CCTCTTGCTCGCCTCACCATCTTGTTTCAGTTGCAAGGGATGCAATCAGAAGGTGCAGTG 400
Query 238 TTAAGCCGTCCAAGCTTATGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGA 297
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TTAAGCCGTCCAAACTTACGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGA 460
Query 298 GCCTTTTGGAAAGGGAATTTGGTTACTGTAGTACACAGGATTCCTTATACTGCAGTAAAC 357
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GCCTTTTGGAAAGGAAATTTGGTTACTGTAGTACACAGGATTCCTTATACTGCAGTAAAC 520
Query 358 TTCTTTGCATATGAAAAGTACAATCTATTTTTCAATTCAAATCCAGTCGTACAGAGTTTT 417
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TTCTATGCATATGAGAAGTACAATCTATTTTTCAATTCAAATCCAGTCGTACAGAGTTTT 580
Query 418 ATAGGAAATACGAGTGGCAACCCGATTGTGCACTTTGTTAGTGGTGGCTTGGCTGGAATT 477
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 581 ATAGGAAATACGAGTGGCAATCCGATAGTGCATTTTGTTAGTGGTGGCTTGGCTGGAATT 640
Query 478 ACAGCTGCTACAGCTACCTATCCCCTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGA 537
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 641 ACAGCTGCTACAGCTACATATCCCCTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGG 700
Query 538 AATGCAATGTATTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGA 597
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 AATGCAATTTACTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGA 760
Query 598 CTTTTGGGTCTATATAAAGGACTTGGTGCTACATTGTTGGGTGTTGGGCCAAGTCTTGCT 657
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 761 ATTTTGGGTCTATATAAAGGACTTGGTGCTACATTATTGGGTGTTGGACCAAGTCTTGCT 820
Query 658 ATCAATTTCGCTGCGTATGAGTCTATGAAATCATTTTGGCATTCTCATAGGCCAAACGAT 717
||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct 821 ATCAATTTCGCCGCGTACGAGTCTATGAAATTGTTTTGGCATTCTCATAGGCCAAATGAT 880
Query 718 TCGAATTTGGTTGTTACTCTTGTTTCTGGAGGTCTAGCTGGAGCTGTTTCTTCAACAG 775
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TCGGATTTGGTTGTTTCTCTTGTTTCTGGAGGTCTAGCTGGAGCTGTTTCTTCAACAG 938
Score = 379 bits (205), Expect = 3e-104
Identities = 227/238 (95%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 807 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGTGGAAGGAGCTGGTGGAAG 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAGTGGAAGGAGCTGGTGGAAG 996
Query 867 AGCGCGAGTATATAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAGG 926
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 AGCAAGAGTATACAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAGG 1056
Query 927 CATCAGAGGTTTATACAGAGGAATATTGCCTGAATATTACAAAGTGGTTCCTGGCGTTGG 986
| ||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1057 CTTCAAAGGGATATACAGAGGAATATTGCCTGAATATTACAAAGTAGTTCCTGGCGTTGG 1116
Query 987 CATCGTCTTCATGACATACGAGGCTTTGAGGAGACTCTTAACTTCTCTCCCCAATTGA 1044
||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 1117 CATCGTCTTCATGACATACGATGCTTTGCGGAGACTCTTAACTTCTCTCCCCGATTGA 1174
> AT3G53940.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr3:19971019-19973769 REVERSE LENGTH=1542
Length=1542
Score = 536 bits (290), Expect = 1e-151
Identities = 539/658 (82%), Gaps = 22/658 (3%)
Strand=Plus/Plus
Query 129 TCTCCTCGCTGGAGGTATTGCCGGCGCCTTTAGCAAGACCTGTACCGCTCCTCTTGCTCG 188
||| ||||| || || || |||||||| ||||| ||||| || |||||||||||||||||
Sbjct 421 TCTTCTCGCCGGTGGAATCGCCGGCGCATTTAGTAAGACATGCACCGCTCCTCTTGCTCG 480
Query 189 CCTCACCATCTTGTTTCAGTTGCAAGGCATGCAATCAGAAGGTGCAGTGTTAAGCCGTCC 248
|| || |||||||||||| | ||||| ||||| || |||| |||| | || ||| ||||
Sbjct 481 TCTTACAATCTTGTTTCAGATACAAGGTATGCAGTCGGAAGCTGCAATCTTGAGCAGTCC 540
Query 249 AAGC-TTATGGCGTGAAGCTTCCCGTATTATCAACGAGGAAGGATATAGAGCCTTTTGGA 307
|| | || |||| ||||||||| |||||| | || |||||||| | |||||| |||||||
Sbjct 541 AAACATT-TGGCATGAAGCTTCGCGTATTGTTAAGGAGGAAGGTTTTAGAGCATTTTGGA 599
Query 308 AAGGGAATTTGGTTACTGTAG-TACA-CAGGATTCCTTATACTGCAGTAAACTTCTTTGC 365
|||| || ||||||||||||| | || | || |||||||| |||||| ||||||| |||
Sbjct 600 AAGGAAACTTGGTTACTGTAGCT-CATC-GGCTTCCTTATGGTGCAGTTAACTTCTATGC 657
Query 366 ATATGAA-AAGTACAA-TCTATT-TTTCAATTCAAATCCAGTCGTACAGAGTTTTATAGG 422
||||||| || ||||| || || || | | || ||||||||| | ||||||| || |||
Sbjct 658 ATATGAAGAA-TACAAGACT-TTCTTGC-ACTCGAATCCAGTCTTGCAGAGTTATAAAGG 714
Query 423 AAATACGAGTG-GCAACCCGAT-TGTGCACTTTGTTAGTGGTGGCTTGGCTGGAATTACA 480
|||| || ||| | | | | |||||||||||| |||||||||||||||||| | |||
Sbjct 715 AAATGCGGGTGTG-GA-CATTTCTGTGCACTTTGTAAGTGGTGGCTTGGCTGGACTAACA 772
Query 481 GCTGCTACAGCTACCTATCCC-CTCGATCTTGTCAGGACTCGTCTTGCTGCACAGAGAAA 539
|||||| |||||||||| ||| ||||||||||| ||||| || ||| |||||||||||||
Sbjct 773 GCTGCTTCAGCTACCTA-CCCTCTCGATCTTGTAAGGACACGGCTTTCTGCACAGAGAAA 831
Query 540 TGCAATGTATTACCAGGGTATTGAGCATACTTTCCGTACCATATGCAGAGAAGAGGGACT 599
| |||| ||||| |||||| ||| |||| | ||||||||||| ||||||||||||||| |
Sbjct 832 TTCAATCTATTATCAGGGTGTTGGGCATGCCTTCCGTACCATTTGCAGAGAAGAGGGAAT 891
Query 600 TTTGGGTCTATATAAAGGACTTGGTGCTACATTGTTGGGTGTTGGGCCAAGTCTTGCTAT 659
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| ||
Sbjct 892 TTTGGGTCTATATAAAGGACTTGGTGCGACATTGTTGGGTGTCGGTCCAAGTCTTGCAAT 951
Query 660 CAATTTCGCTGCGTATGAGTCTATGAAATCATTTTGGCAT-TCTCATAGGCCAAACGATT 718
|| ||||| ||||||||| || | ||| ||||||||| | ||||||||||| || ||||
Sbjct 952 CAGCTTCGCAGCGTATGAGACTTTTAAAACATTTTGGC-TCTCTCATAGGCCTAATGATT 1010
Query 719 CGAATTTGGTTGTTACTCTTGTTTCTGG-AGGTCTAGCTGGAGCTGTTTCTTCAACAG 775
| ||| || |||| ||||| || ||| || ||| | ||| |||||| || ||||
Sbjct 1011 CAAATGCCGTGGTTAGTCTTGGTTGTGGCAG-TCTCTCCGGAATTGTTTCCTCTACAG 1067
Score = 243 bits (131), Expect = 4e-63
Identities = 204/239 (85%), Gaps = 6/239 (3%)
Strand=Plus/Plus
Query 807 AGCTACATACCCATTGGATCTTGTGAGAAGAAGAATGCAAG-TGGAAGGAGCTGGTGGAA 865
||| |||| ||||||||| || |||||||||||||||| || ||||||||||||||||
Sbjct 1066 AGCGACATTCCCATTGGACCTGGTGAGAAGAAGAATGC-AGTTGGAAGGAGCTGGTGGGC 1124
Query 866 GAGCGCGAGTATATAACACTGGACTCTTTGGAACATTCAAACACATATTCAAGTCAGAAG 925
||||| |||| |||| ||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1125 GAGCGAGAGTGTATACCACAGGACTCTTTGGAACATTCAAACACATATTTAAGACAGAAG 1184
Query 926 GCATCAGAGGTTTATACAGAGGAAT-ATTGCCTGAATATTACAAAGTGGTTCCTGGCGTT 984
|||| ||||| ||||||||||||| || || ||||| ||||||||||||||||| |||
Sbjct 1185 GCATGAGAGGGCTATACAGAGGAATCATA-CCAGAATACTACAAAGTGGTTCCTGGTGTT 1243
Query 985 GGCATCGTCTTCATGACATACGAGGCTTTGAGGA-GACTCTTAACTTCTCTCCCCAATT 1042
||||||| ||||||||||| ||||| |||| || | |||||| | || |||| ||||
Sbjct 1244 GGCATCGCCTTCATGACATTCGAGGAATTGAAGAAG-CTCTTATCAACTGTCCCTAATT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51188595793
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5