BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg321574 Length=1377 Score E Sequences producing significant alignments: (Bits) Value AT2G38780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2119 0.0 > AT2G38780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr2:16210857-16214232 FORWARD LENGTH=1527 Length=1527 Score = 2119 bits (1147), Expect = 0.0 Identities = 1301/1375 (95%), Gaps = 11/1375 (1%) Strand=Plus/Plus Query 10 CCACGAGTCTTTG-AAACTTTGCCACTCCAAAAATGGCTAACCAGCTCTTCTCTGCACCA 68 |||| ||||| || |||| ||| ||||||||||||||||||||||||||||||| ||||| Sbjct 35 CCACAAGTCTGTGAAAACATTG-CACTCCAAAAATGGCTAACCAGCTCTTCTCTCCACCA 93 Query 69 ACCCATGGCTTCTTTCAACCACTCCTGGCTCTCTTCTCCACTCACCGAAACTCCTACTTG 128 | |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 94 AACCATGGCTTCTTTCAACCACTCTTGGCTCTCTTCTCCACTCACCGAAACTCCCGCTTT 153 Query 129 CTTTTTGTATCCATCCCAACAGCCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAG 188 |||||| | |||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 154 CTTTTTTTCTCCATCTCAACACCCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAG 213 Query 189 CAA--C-TCCTCGTCGGAACGCTCGTCGGAGGTTGAGCTCGCCGTGGATCCGGTGAAGCT 245 ||| | ||||| |||| |||||||| ||||||||||||| ||||||||||||||||| Sbjct 214 CAACTCGTCCTCACCGGACCGCTCGTCAGAGGTTGAGCTCGATGTGGATCCGGTGAAGCT 273 Query 246 TGCATTGAAGAAAGCCGAAGCTTATAAGAAATCGAAATCGGAGGGAAAAGAACGAGAGCA 305 |||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||| | Sbjct 274 CGCATTGAAGAAAGCCGAAGCTTATAAGAAATCGAAATCAGAGCAAAAAAAACCAGAGAA 333 Query 306 AAATGCCGGCGACGAGGAATTGCCGCTCTCGGTTAAGGCTGCTATGCAAAAAGCCAATGA 365 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 334 AAATGCCGGCGACGAGGAATTGCCGCTCTCTGTTAAGGCTGCTATGCAAAAAGCCAATGA 393 Query 366 CTATAAGAAAAGGAAAGGGCTTGGAACTGATGCTGTCG-AGGAAGCTAAACCCAGTAGTA 424 ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| || Sbjct 394 TTATAAGAAAAGGAAAGGACTTGGAACTGATGCTGTCGCA-AAAGCTAAACCCAGTAATA 452 Query 425 CAGAGCAAAGTTTTGTTAGATCATCAAACAAGGTTGTTGAAGATAATGATGTTAAGAAGA 484 |||| |||||||| ||||||| | |||| ||||||||||||||||||||||||||||||| Sbjct 453 CAGATCAAAGTTTCGTTAGATTAGCAAATAAGGTTGTTGAAGATAATGATGTTAAGAAGA 512 Query 485 AAGAATTGAAAGTCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAAAGCA 544 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 513 AAGAATTGAAAGTCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAGAGCA 572 Query 545 CAAGAGGGCTTCCAGCGGGACTTGTTCCTATTGTCGACTATCTTCCTGAAGGAGACTTAC 604 | || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 573 CGAGGGGGCTTCCAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTGAAGGAGACTTAC 632 Query 605 CTGAGGTGGAGTTTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTCG 664 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 633 CTGAGGTGGAGTTTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTTG 692 Query 665 AGCAAGAAGGAGATGGAAACTCTGATGTGTATAAGCCCAAAGTTTCTACATGGGGAGTTT 724 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 693 AGCAAGAAGGAGATGGAAACTCTGATGTGTATAAACCCAAAGTTTCTACATGGGGAGTTT 752 Query 725 TCCCAAGACCTAGCAACATCTCTAAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGG 784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 753 TCCCAAGACCTAGCAACATCTCTAAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGG 812 Query 785 ATTCAGTTGAGACCGCTGAAGAGAGGATTGTGAGAGAAGAACAGACaaaaaaaTTGCTCA 844 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 813 ATTCAGTTGAGACCGCTGAAGAGAGGATTGTGAGAGAAGAAAAGACAAAAAAATTGCTCA 872 Query 845 TAGCCTACAAGGAATCAATCGGACTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGA 904 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 873 TAGCCTACAAGGAATCACTCGGACTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGA 932 Query 905 AGGCAATAGAAGAGGGGAACTCGCTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCAT 964 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 933 AGGCAATAGACGAGGGGAACTCGCTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCAT 992 Query 965 ACTATGAAAAGGTCATGGAGAAAATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTT 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 993 ACTATGAAAAGGTCATGGAGAAAATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTT 1052 Query 1025 TGCAGTGGTCTATTTGTCAGGATTCACTTCGAAAGACAGACAAAGCAAGGCGCATGTATG 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1053 TGCAGTGGTCTATTTGTCAGGATTCACTTCGAAAGACAGACAAAGCAAGGCGCATGTATG 1112 Query 1085 AGAAGCTTATATCCCACCCAAACTCGGGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCA 1144 |||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 1113 AGAAGCTTATTTCCCATCCAAACCCGGGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCA 1172 Query 1145 GTTTTCAGGCAATGGAGATGCTGAAGGTTAAGGGGTCGAGCTT--CATCGATGGAAACAC 1202 ||||||||||||||||||||||||||||||||||||||||||| | | || |||||||| Sbjct 1173 GTTTTCAGGCAATGGAGATGCTGAAGGTTAAGGGGTCGAGCTTTGC-T-GAAGGAAACAC 1230 Query 1203 TGGTTATCAGGACTACTTTGAAGCCTTTGTCAAAGATAATACGGATTACCAAGCGCAAGA 1262 |||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||| || Sbjct 1231 TGGTTATCAGGACTACTTTGAAGCCTTTGTTGAAGATAAAACGAATTACAAAGCGCAGGA 1290 Query 1263 AGAAAAAGAAGGAGAGGCAATGGGGATAAATGAGACACTCCTATATGTGATTCTTCTTGC 1322 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1291 GGAAAAAGAAGGAGAGGAAATGGGGATAAATGAGACACTCCTATATGTGATTCTTCTTGC 1350 Query 1323 GTCTCCGATTCTAATGGTCTTCATTGTGGCTGCACAGAGAGGGAATATGCACTGA 1377 |||||||||||||||||||||||||| ||||||||||||||| ||| |||||| Sbjct 1351 TTCTCCGATTCTAATGGTCTTCATTGTAGCTGCACAGAGAGGGTATACACACTGA 1405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67820936295 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5