BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg321616 Length=963 Score E Sequences producing significant alignments: (Bits) Value AT2G39250.1 | Symbols: SNZ | Integrase-type DNA-binding superfa... 1404 0.0 > AT2G39250.1 | Symbols: SNZ | Integrase-type DNA-binding superfamily protein | chr2:16388886-16391073 REVERSE LENGTH=1244 Length=1244 Score = 1404 bits (760), Expect = 0.0 Identities = 910/980 (93%), Gaps = 19/980 (2%) Strand=Plus/Plus Query 1 ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGACGAAGATTGCAAAGTA 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 143 ATGTTGGACCTCAACCTCGGAATCTTGTCGACACACAACGAAGATGAAGATTGCAAAGTA 202 Query 61 CCAACCTCCATCGTCCA-TCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTC 119 ||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||| Sbjct 203 CCAACTTCCATC-TTCATTCAAGAAGAAGATTCCATTAATCCCTCAAACGACAACTTGTC 261 Query 120 TTTAATTACATTCGGAATCCTTAAAAGAAA---AGAAGA-GGTT-GAAAt---cct--tc 169 ||| |||||||| |||||||||||| |||| ||| | || | ||| || Sbjct 262 TTTGATTACATTTGGAATCCTTAAACGAAACGTCGAA-ATCCTTCCTCCTCCCCCTCCTC 320 Query 170 ctcctcctcctcctcct-c--cGGAGAGTGTGTTATCCGGCGCCGGAAACGAGTGGTTGA 226 ||||||||||||||||| | |||| | || | |||||| ||||||| ||||||||| Sbjct 321 CTCCTCCTCCTCCTCCTCCTTCGGAAAATGAACTCTCCGGCCCCGGAAATGAGTGGTTGG 380 Query 227 ATCTGTCGTCGATGCAAAGAAATAAACAAGAAATGTTGGTGATGAAGAAGAAGAGCCGAC 286 |||| |||||||||||||||||||||||||||| ||||||||||||||| || || |||| Sbjct 381 ATCTTTCGTCGATGCAAAGAAATAAACAAGAAACGTTGGTGATGAAGAAAAAAAGTCGAC 440 Query 287 GTGGTCCAAGATCCAGAAGCTCCCATTATCGTGGCGTCACCTTTTACCGTCGAACTGGCC 346 |||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| |||| Sbjct 441 GTGGCCCAAGATCAAGAAGCTCTCATTATCGTGGCGTTACCTTTTACCGTCGAACCGGCC 500 Query 347 GTTGGGAATCTCATATTTGGGACTGTGGAAAACAGGTTTATTTGGGTGGTTTCGACACAG 406 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 501 GTTGGGAATCTCATATTTGGGACTGTGGAAAACAAGTTTATTTGGGTGGTTTCGACACAG 560 Query 407 CCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAG 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 561 CCTACACAGCCGCAAGAGCGTACGACCGAGCTGCTATCAGATTCCGGGGACTCCAAGCAG 620 Query 467 ATATCAATTTTATCGTGGATGATTACAAACAGGACATTGAAAAGATGAAGAATTTAAGCA 526 ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 621 ATATCAACTTTATCGTGGATGATTACAAACAAGACATTGAAAAGATGAAGAATTTAAGCA 680 Query 527 AAGAAGAGTTTGTGCAATCTCATAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTA 586 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 681 AAGAAGAGTTTGTGCAATCTCTTAGACGAGCGAGTGCAAGCTTAGCAAGAGGAGGTTCTA 740 Query 587 AATACAAAAACACCCATACGAGAAATGATCACATCCATCTCTTCCAAAACAGGGGATGGA 646 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 741 AATACAAAAACACCCATATGAGAAATGATCACATCCATCTCTTCCAAAACAGGGGATTGA 800 Query 647 ATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTG 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 801 ATGCAGCAGCAGCAAAATGCAATGAGATAAGAAAGATGGAAGGGGATATTAAGTTGGGTG 860 Query 707 CCCATAATAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGAATATCTTCATCGT 766 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 861 CCCATAGTAAAGGAAATGAGCACAACGATCTCGAGCTAAGTCTTGGGATATCTTCATCGT 920 Query 767 CaaaaaaaaGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCTGTGATGA 826 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 921 CAAAAGTTAGAATTTTGGAACCAGCAGATTATTACATGGGTTTGAATCGATCGGTGACGA 980 Query 827 GTTTGCATGGGAAGCCGTTGCCGGTATATCTACCGATCACAGAAATGAAACCGTTAAAGA 886 |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 981 GTTTGCATGGGAAGCCGTTGCCGGGATATCTACCGATCACAGAAATTAAACCGTTAAAGA 1040 Query 887 CAGTTGTAGCATCATCAGGATTCCCTTTCATTGCCATGAACAATTCTTCTTCTTTGACC- 945 |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || Sbjct 1041 CAGTTGTAGCATCATCAGGATTCCCTTTCATTACCATGATCAATCCTTCTTCTTTGTCCT 1100 Query 946 -A-CTTGTTTTGATCCATGA 963 | ||||||||||||||||| Sbjct 1101 TATCTTGTTTTGATCCATGA 1120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47119629886 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5