BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg321802 Length=861 Score E Sequences producing significant alignments: (Bits) Value AT2G41160.1 | Symbols: | Ubiquitin-associated (UBA) protein | ... 1393 0.0 > AT2G41160.1 | Symbols: | Ubiquitin-associated (UBA) protein | chr2:17156029-17158880 REVERSE LENGTH=1342 Length=1342 Score = 1393 bits (754), Expect = 0.0 Identities = 828/864 (96%), Gaps = 3/864 (0%) Strand=Plus/Plus Query 1 ATGAACGGAGGTCCTTCCGGTTTCCATAATGCTCCGGTCACGAAAGCCTTCGTCATCGCG 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 194 ATGAACGGAGGTCCTTCCGGTTTCAATAATGCTCCGGTCACGAAAGCCTTCGTCATCGCG 253 Query 61 ACTGCTCTTTTCACTGTGTTCTTCGGGATCCGGGGAGGTTCTTCCAAGCTCGGTTTGTCT 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 254 ACTGCTCTTTTCACTGTGTTCTTCGGGATCCGGGGAGGTTCTTCCAAGCTCGGCTTATCT 313 Query 121 TACCAGGATATCTTTGAGAAGTTTCGGATTTGGAAGTTAATTATATCGGCTTTTGCGTTC 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 314 TACCAGGATATTTTTGAGAAGTTTCGGATTTGGAAGTTAATTATATCGGCTTTTGCCTTC 373 Query 181 TCGTCCACAACAGAATTGTTTTCTGGCTTGTATCTGCTCTACTTCTTCCGAGTCTTTGAG 240 ||||||||||| ||||| |||||||||| ||| |||| ||||||||||||||||||||| Sbjct 374 TCGTCCACAACTCAATTGCTTTCTGGCTTATATTTGCTATACTTCTTCCGAGTCTTTGAG 433 Query 241 AGACAGATTGGTTCAAATAAGTATTCGGTTTTCATCTTGTTCTCTGGATTTGTATCACTA 300 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 434 AGACAGATTGGTTCAAATAAGTATTCGGTTTTCATCTTCTTCTCTGGATTTGTATCACTA 493 Query 301 ATACTAGAGACCATTTTGTTATCACTGACTAAAGATCCTACTGCAAACCTCCTGACATCT 360 |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 494 ATACTAGAGACCATTTTGTTATCATTGACTAAAGATCCTACTGCAAACCTACTGACATCT 553 Query 361 GGACCATACGCCCTTGTATTTGCTTCGTTTGTACCCTTCTTCTTGGACATTCCAGTTACA 420 |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||| Sbjct 554 GGACCATACGCCCTCGTATTCGCTTCTTTTGTACCCTTCTTCTTGGATATTCCAGTTACA 613 Query 421 AAGAGGTTTGGTGTATTGGGCGTCCACTTCTCTGATAAATCATTCATATATCTTGCAGGT 480 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 614 AAGAGGTTTGGTGTATTGGGCGTCCACTTCTCTGATAAATCATTCATATACCTTGCAGGT 673 Query 481 GTCCAGCTTTTACTATCATCTTGGAAAAGATCCATATTTACTGGAATTTGTGGCATAATT 540 |||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||||| Sbjct 674 GTCCAGCTTTTACTATCATCATGGAAAAGGTCCATCTTTACTGGAATTTGCGGTATAATT 733 Query 541 GCTGGTTCCTTGTATCGGTTGAACATCTTTGGTATTCGCAAGGCAAAGTTCCCGGAGTTC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 GCTGGTTCCTTGTATCGGTTGAACATCTTTGGTATTCGCAAGGCAAAGTTCCCGGAGTTC 793 Query 601 CTGGCTTCGTTATTCTCCCGGTTTTCCTTACCCTCCTTGAGCAGCCATTCTCAACCACCA 660 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 ATGGCTTCGTTATTCTCCCGGTTTTCCTTACCCTCCTTGAGCAGCCATTCTCAACCACCA 853 Query 661 AGAAGGACCTCACCTAACTTAGGTCGTCAAGCA---AGAGCTTATCGAGCCCCAATGCCG 717 |||||||| ||||| ||||||||||| |||||| |||||||||||||| ||||||||| Sbjct 854 AGAAGGACATCACCCAACTTAGGTCGCCAAGCAGTGAGAGCTTATCGAGCTCCAATGCCG 913 Query 718 TCAACTACAGAGCCATCTGAGGAAGCCATAGCTACTTTGGTATCTATGGGATTTGACCAG 777 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 914 TCAACTACAGAGCCATCAGAGGAAGCCATAGCTACTTTGGTATCTATGGGATTTGACCAG 973 Query 778 AACGCAGCGAGACAGGCGCTTGTACACGCCAGAAATGATATCAACGCTGCCACCAATATC 837 || |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 974 AATGCAGCGAGACAGGCGCTTGTACACGCCAGAAATGATGTCAACGCTGCCACCAACATC 1033 Query 838 CTTCTTGAAGCACACTCTCACTAA 861 |||||||||||||||||||||||| Sbjct 1034 CTTCTTGAAGCACACTCTCACTAA 1057 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41995746892 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5