BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg321803
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41170.1 | Symbols: | F-box family protein | chr2:17159104-... 1581 0.0
> AT2G41170.1 | Symbols: | F-box family protein | chr2:17159104-17161136
REVERSE LENGTH=1613
Length=1613
Score = 1581 bits (856), Expect = 0.0
Identities = 1038/1124 (92%), Gaps = 19/1124 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAAACAGTATCTCACTTTCCTTTCGTTTTGTTTCTCCAACACAATTTGTGGGCTA 60
|||||||||||||| ||||||||| |||| ||||||||||||| ||| ||||||||| |
Sbjct 292 ATGGAGAAACAGTACCTCACTTTCATTTCTTTTTGTTTCTCCATCACCATTTGTGGGTTC 351
Query 61 CTCATAGTTTCTTGGCTTGCAAGAAGCATAATCCGAAATGGGTTAATAAGAACATTAGCA 120
||||||||||||||||| ||||||||||||||||| |||||| || ||||||||| ||
Sbjct 352 CTCATAGTTTCTTGGCTGGCAAGAAGCATAATCCGTAATGGG---ATTAGAACATTAACA 408
Query 121 TGGagaaaagaaa-g--gaagaagaagaagaatcaagaagaTGAAAACAAAATGTCTCTC 177
|||||||| |||| | || |||||| |||||||||||||||||||||||||||||||||
Sbjct 409 TGGAGAAAGGAAACGAAGAGGAAGAAAAAGAATCAAGAAGATGAAAACAAAATGTCTCTC 468
Query 178 CTGGATTTGCCTGACTTAACCTTAGACTGCATCTTAGAAAAGCTCTCCCCATCTGAGCTA 237
||||||||||| |||||||||||||||||||| ||||| |||||||| ||||| |||||
Sbjct 469 CTGGATTTGCCGGACTTAACCTTAGACTGCATATTAGAGAAGCTCTCACCATCAGAGCTC 528
Query 238 TGTGCAATGACTTGTGTTTGCTCTGAGCTGAGGGACAAATGTGTGAGCGACCATCTATGG 297
|||||||||||| |||||||||| ||||| || || || ||||| ||||| |||||||||
Sbjct 529 TGTGCAATGACTAGTGTTTGCTCCGAGCTAAGAGATAAGTGTGTAAGCGATCATCTATGG 588
Query 298 GAGAAGCATATGGAGA-AGAAATGGGGAAGATTGATGGGTGACGCAGCGACACAAGAGTG 356
|||||||||||||||| | ||||||||||||||||||||||| ||||||| ||||||||
Sbjct 589 GAGAAGCATATGGAGACA-AAATGGGGAAGATTGATGGGTGATGCAGCGATTCAAGAGTG 647
Query 357 GAAATCTCACGTTGCTACGATAATGAGATGTCTCAGAAGT--T-GTAGCAGTAG--G-AA 410
||||||||||||||||||||||||||||||||||| |||| | |||| ||||| | ||
Sbjct 648 GAAATCTCACGTTGCTACGATAATGAGATGTCTCACAAGTAGTAGTAGTAGTAGTAGAAA 707
Query 411 GAGTAAACCAAACTGGAGTTCGAGGTTTGTTGCGAGTCTT-AAACCCTTTGCATGGTTAA 469
||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 708 GAGTAAACCAAACTGGAGTTCGAGGTTTGTTGCGAAT-TTGAAACCCTTTGCATGGTTAA 766
Query 470 GCTCAAACCATGGTTGTGAAAACAGAGGATCATCATCAACATATTTGGCACCTATTGATT 529
| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 767 GTTCAAACCATGGTTGTGAAAACAGAGGATCATCAT---CATATTTGGCACCTATAGATT 823
Query 530 CTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCT 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 CTGTGATGTATTGGTACTCGAATCTTGAAAATGGCAAGTTTTGGTTCCCTGCTCAAGTCT 883
Query 590 ACAATCGTGAGAACGGACATGTTGGATTCATGATGTCTTGTTACGATGCTAAAATCAGAT 649
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 884 ACAATCGCGAGAACGGACATGTTGGATTCATGATGTCTTGTTACGATGCTAAGATCAGAT 943
Query 650 ACGATTTCAAGACTGATACATTTCAAGCTAGATACTCGGCGCATGGCCGGCGAGCGGCGG 709
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 944 ACGATTTCAAGACTGATACATTTCAAGCTAGATACTCGGCACATGGCCGGCGAGCGGCGG 1003
Query 710 AGGAAAAGGTGAGGTGGCAGAGGCTGAGACCGTCCCAAGACGACACAAAGTCACGTGATC 769
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1004 AGGAAAAGGTGACGTGGCAGAGGCTGAGACCGTCTCAAGACGACACAAAGTCACGTGATC 1063
Query 770 TACACGTGTCAGATTGTTTGCACGGACTTCGACCTGGTGACCATTTCGAGATCCAATGGC 829
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 TGCACGTGTCAGATTGTTTGCACGGACTTCGACCTGGTGACCATTTCGAGATCCAATGGC 1123
Query 830 GAAGAACCAAAGAATTCCCTTATGGTTGGTGGTTCGGAATCGTGGGTCATCTGCAAAACT 889
|| |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1124 GACGAACCAAAGAGTTCCCTTATGGTTGGTGGTTCGGAATCGTTGGTCATCTACAAAACT 1183
Query 890 GCGACGGCGGAGAGAATTGCCGTTGCCACTCTGATGAGAATGTGGTGATGGAATTCAGAC 949
||||||||| | | ||||| |||||| ||||||| ||||||||||||||||| |||||||
Sbjct 1184 GCGACGGCGTACAAAATTGTCGTTGCGACTCTGACGAGAATGTGGTGATGGAGTTCAGAC 1243
Query 950 AATTTAGACAGGAGTCACCGTGGAGAAGGACGGTGATAAACAGGAAGGAACACCGTGAGA 1009
|||| |||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||||
Sbjct 1244 AATTCAGACCGGAATCACCGTGGAGAAGAACGGTGATAAAGAGGAAAGACCACCGTGAGA 1303
Query 1010 CGGGAGATGAAGAAAACGGCTTCTACGGCGGGGTAAAGAAATTGGGTACGGAGCAAGAGA 1069
||||| ||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1304 CGGGAAATGAAGAAAACGGTTTCTACGGCGGAGTAAAGAAATTGGGTACGGAGGAAGAGA 1363
Query 1070 TTTCTACATGGAAGCGATTGTGGCCATCACAAGCCTTGGAATAG 1113
||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 1364 TTTCTACGTGGAAGCAATTGTGGCCATCACAAGCCTTGGAGTAG 1407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54567992415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5