BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg321975

Length=564
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42975.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   837    0.0  


> AT2G42975.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast thylakoid membrane, chloroplast; 
Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; 
Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17873947-17874936 
FORWARD LENGTH=731
Length=731

 Score =  837 bits (453),  Expect = 0.0
 Identities = 533/570 (94%), Gaps = 12/570 (2%)
 Strand=Plus/Plus

Query  1    ATGGCCTTGAACTTCTTCTCCGCTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCT  60
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  52   ATGGCCTTGAACTTCTTCTCCACTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCT  111

Query  61   CGATCCAAACAGAGACATCATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGC  120
            |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  112  CGATCCAAACAGAG-C--CATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGT  168

Query  121  GTCCGTTCTGAGCGGAGCGAAATCGGCGTCACT---GACAACAACGA-ttcttc--ttct  174
            ||||| || ||||| || |||||||||||||||   ||||||||| |   |  |  | ||
Sbjct  169  GTCCGCTCCGAGCGAAGTGAAATCGGCGTCACTGACGACAACAACAACAACAACGATACT  228

Query  175  tcttcttcttctttctccggttcttcttcttcttcGTCATCAGTACGCACACAACTAGAT  234
            ||||| |||||||||||||||||||| ||||| |  ||||||||||||||||||||||||
Sbjct  229  TCTTCGTCTTCTTTCTCCGGTTCTTCGTCTTC-T--TCATCAGTACGCACACAACTAGAT  285

Query  235  CTCCTTGAACAGCTAACTTCAACAAGTGATGGGTACTTGAGTGATGGTGGTGGCTCGAGA  294
            |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  286  CTCCTTGAGCAGCTAACTTCAACAAGTGATGGGTACTTAAGTGATGGTGGTGGCTCAAGA  345

Query  295  GGACTCACAATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGACGATTTCTCC  354
            |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||  |
Sbjct  346  GGACTCACTATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGATGATTTCAGC  405

Query  355  ATTCCCTTAGGCAAAAACTTAAAGAAAGTGAGTCCTAAATTCTTAACCATATCTCAGAAA  414
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  406  ATTCCCTTAGGCAAGAACTTAAAGAAAGTGAGTCCTAAATTCTTAACGATATCTCAGAAA  465

Query  415  AGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTC  474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  466  AGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTC  525

Query  475  TTTGCTACTATCGGCGCCTTTGTAATCCTTCCGCCTTTGGTCATTCTAGCTATTGCTATC  534
            ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  526  TTTGCTACTATTGGCGCCTTTGTAATCCTTCCTCCTTTGGTCATTCTAGCTATTGCTATC  585

Query  535  TTAACTGGCTATGTTCAACTCTTCCCTTAA  564
            ||||||||||||||||||||||||||||||
Sbjct  586  TTAACTGGCTATGTTCAACTCTTCCCTTAA  615



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27076205233


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5