BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg321975 Length=564 Score E Sequences producing significant alignments: (Bits) Value AT2G42975.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 837 0.0 > AT2G42975.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17873947-17874936 FORWARD LENGTH=731 Length=731 Score = 837 bits (453), Expect = 0.0 Identities = 533/570 (94%), Gaps = 12/570 (2%) Strand=Plus/Plus Query 1 ATGGCCTTGAACTTCTTCTCCGCTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCT 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 52 ATGGCCTTGAACTTCTTCTCCACTTCTCTTCACCCAATTTCAAACCCATCTTCTTCCTCT 111 Query 61 CGATCCAAACAGAGACATCATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGC 120 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 112 CGATCCAAACAGAG-C--CATCATCTCCTTCTGCAACTCTCTTCTCCTCCAGCAACACGT 168 Query 121 GTCCGTTCTGAGCGGAGCGAAATCGGCGTCACT---GACAACAACGA-ttcttc--ttct 174 ||||| || ||||| || ||||||||||||||| ||||||||| | | | | || Sbjct 169 GTCCGCTCCGAGCGAAGTGAAATCGGCGTCACTGACGACAACAACAACAACAACGATACT 228 Query 175 tcttcttcttctttctccggttcttcttcttcttcGTCATCAGTACGCACACAACTAGAT 234 ||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||| Sbjct 229 TCTTCGTCTTCTTTCTCCGGTTCTTCGTCTTC-T--TCATCAGTACGCACACAACTAGAT 285 Query 235 CTCCTTGAACAGCTAACTTCAACAAGTGATGGGTACTTGAGTGATGGTGGTGGCTCGAGA 294 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 286 CTCCTTGAGCAGCTAACTTCAACAAGTGATGGGTACTTAAGTGATGGTGGTGGCTCAAGA 345 Query 295 GGACTCACAATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGACGATTTCTCC 354 |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 346 GGACTCACTATTCGTGACCAATTGGCTGGACTTGTTGGTGACAGAGACGATGATTTCAGC 405 Query 355 ATTCCCTTAGGCAAAAACTTAAAGAAAGTGAGTCCTAAATTCTTAACCATATCTCAGAAA 414 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 406 ATTCCCTTAGGCAAGAACTTAAAGAAAGTGAGTCCTAAATTCTTAACGATATCTCAGAAA 465 Query 415 AGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTC 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 AGGAACATTAAGAGACAAAGCTACCTTAATGAGGTCTCTCAGAGGAATGATTCTGTTTTC 525 Query 475 TTTGCTACTATCGGCGCCTTTGTAATCCTTCCGCCTTTGGTCATTCTAGCTATTGCTATC 534 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 526 TTTGCTACTATTGGCGCCTTTGTAATCCTTCCTCCTTTGGTCATTCTAGCTATTGCTATC 585 Query 535 TTAACTGGCTATGTTCAACTCTTCCCTTAA 564 |||||||||||||||||||||||||||||| Sbjct 586 TTAACTGGCTATGTTCAACTCTTCCCTTAA 615 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27076205233 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5