BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322062
Length=1605
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43970.1 | Symbols: | RNA-binding protein | chr2:18205235-1... 2423 0.0
> AT2G43970.1 | Symbols: | RNA-binding protein | chr2:18205235-18208218
REVERSE LENGTH=2125
Length=2125
Score = 2423 bits (1312), Expect = 0.0
Identities = 1539/1642 (94%), Gaps = 41/1642 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAACAAACCCTAGATTCGTCTA---CTCCTCCTACTCAATCCGATGATCTA 57
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 188 ATGGCTGATCAACAAACCCTAGATTCCTCTACTCCTCCTCCTACTCAATCCGATGATCTA 247
Query 58 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCATCAGATCCATCGCTC 117
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 248 TCTCACTCCCACTCTACTTCCTCTACTACTTCAGCTTCTTCTTCCTCAGATCCATCACTC 307
Query 118 TTAAGGTCTCTCTCCTTAAGTCGACTCAACGCCGGAGCTCCTGAGTTCGTTCCTGGTCGA 177
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTGAGGTCTCTCTCCTTAAGTCGACTCAACGCCGGAGCTCCTGAGTTCGTTCCTGGTCGA 367
Query 178 ACTACTCCTCCGCTACCTCAACCTCCGAGGATGATTATCCCACCTCCTCCACCGCACGGT 237
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 368 ACTACTCCTCCGCTGCCTCAACCTCCGAGGATGATTATCCCGCCTCCTCCGCCGCACGGT 427
Query 238 ATGCTTCATATGTATCACCACCAGCCTCCTTTCAATACTCCGGTTCTTGGTCCTGTTCCA 297
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 428 ATGCTTCATATGTATCACCACCAGCCTCCTTTCAATACTCCAGTTCTTGGTCCTGTTCCA 487
Query 298 ATCCAGCCTCACTTGGTCCCTGTTCAAAACcatcatcctcatcatcgc-tt--t---cat 351
|||||||| |||||||| ||||||||||| || || |||||||||||| || | |||
Sbjct 488 ATCCAGCCACACTTGGTTCCTGTTCAAAATCACCACCCTCATCATCGCTTTCATCAGCAT 547
Query 352 catcatcacaatcgtcatcagaatcaGCAATATGTTCCGGTGAGGAATCACGGAGATTAT 411
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 548 CATCATCACAATCGTCATCAGAATCAGCAATATGTCCCGGTGAGGAATCACGGAGAGTAT 607
Query 412 CAGCAGC--------GT-GGTGGTGACCAGGAACCGGATTTGGTTCCGAAGAAGAACGAT 462
||||||| || |||||||| |||||||||||||||||| | |||||||| |||
Sbjct 608 CAGCAGCGTGGTGGTGTCGGTGGTGAGCAGGAACCGGATTTGGTTTCAAAGAAGAATGAT 667
Query 463 CGGAGAGATCATAGTAAGAGAGAATCTAAGACCGATCAAGCT-ACTGAAACTGGAGCTTC 521
||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 668 CGGAGAGATCATAGTAAGAGAGAATCTAAGAACGATCAAG-TGACTGAAACTGGAGCTTC 726
Query 522 TGTTTCTATTGATTCTAAAACTGGTTTACCTGAAGATTCTATCCAGAAGATTGTGAATCA 581
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 727 TGTTTCTATTGATTCAAAAACTGGTTTGCCTGAAGATTCTATCCAGAAGATTGTGAATCA 786
Query 582 GGTTGAATACTATTTCAGTGACTTGAACTTGGCGACAACAGATCATCTCATGAGATTCAT 641
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 787 GGTTGAATACTATTTCAGTGACTTGAACTTGGCTACTACAGATCATCTCATGAGATTCAT 846
Query 642 TTGCAAGGATCCTGAAGGATATGTGCCTATTCATGTTGTTGCATCGTTCAAGAAAATTAA 701
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 847 TTGCAAGGATCCTGAAGGATATGTGCCTATTCATGTTGTTGCGTCGTTCAAGAAAATTAA 906
Query 702 AGCTGTCATTAACAGTAATTCTCAGCTTGCCGCAGTGCTACAGAACTCAGCAAAGCTTTT 761
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 907 AGCTGTCATTAACAATAATTCTCAGCTTGCCGCAGTGCTACAGAACTCAGCTAAGCTTTT 966
Query 762 TGTTAGTGAAGATGGAAAGAAAGTGAGACGCATAAATCCGATCACTGAGTCTGCTATAGA 821
||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||
Sbjct 967 TGTTAGTGAAGATGGAAAGAAAGTGAGACGCATAAGTCCGATTACTGAGTCGGCTATAGA 1026
Query 822 AGAGCTCCAGTCTCGCATTATTATTGCTGAGAATCTACCTGAGGATCATTGCTACCAAAA 881
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1027 AGAGCTTCAGTCTCGCATTATTGTTGCTGAGAATCTCCCTGAGGATCATTGCTACCAAAA 1086
Query 882 TCTGATGAAGATTTTCTCAACTGTTGGAAGTGTGAAGAACATCCGTACCTGCCAGCCACA 941
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1087 CCTGATGAAGATTTTTTCAACTGTTGGAAGTGTGAAGAACATCCGTACCTGCCAGCCTCA 1146
Query 942 AAATAATGGAAGCAGTGCTCCACCCGCAGCAAGATCAGCAGCCAAAAGCGATGGTACGCT 1001
||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1147 AAATAATGGAAGCGGTGCTCCACCCGCAGCGAGATCAGCAGCTAAAAGCGATGGTACGCT 1206
Query 1002 TTTCAGTAACAAGGTCCATGCTTTTGTTGAGTATGAGATGGTTGAACTAGCCGAGAAAGC 1061
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||
Sbjct 1207 TTTCAGTAACAAGGTCCATGCTTTTGTTGAGTATGAGATTGTTGAGCTAGCCGAGAGAGC 1266
Query 1062 AGTTGCCGAGTTAAATGAAGCGGGAAATTGGAGGAGCGGTCTTAAAGTCCGGTTGATGCT 1121
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 AGTTACCGAGTTAAGTGAAGCGGGAAATTGGAGGAGCGGTCTTAAAGTCCGGTTGATGCT 1326
Query 1122 AAAGAATCAGATAAAGGAACCAAAACAAGGTCAAGGGCGAGGAAGAAAAGGACATGATGC 1181
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 AAAGCATCAGACGAAGGAACCAAAACAAGGTCAAGGGCGAGGAAGAAAAGGACATGATGC 1386
Query 1182 AGAAGTAGAACATGAGGAAGATGATGCTACAACATCCGAGCAGCAGCCGATTGAGAAACA 1241
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 AGATGTAGAACATGAGGAAGATGATGCTACAACATCCGAGCAGCAGCCGATTGAGAAACA 1446
Query 1242 ATCTGAAGAGTGTTCTGGGGAATGGGATACACATATGCAAGAGCAGCCAATAATAGGAGA 1301
|||||| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1447 ATCTGATGACTGTTCTGGGGAATGGGATACACATATGCAAGAGCAGCCAATA---GGAGA 1503
Query 1302 GGATCAAGGGAATGAGAAAGCGGGTGGACAGAGAAAAGGGCGTAACAGAGGTAGAGGAAA 1361
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1504 GGATCAAGGGAATGAGAAAGCGGCTGGGCAGAGAAAAGGGCGTAACAGAGGTAGAGGAAA 1563
Query 1362 GGGACGAGGACGAGGTcaaccacaccagaaccagaaccagaacaacaaccacagcca--- 1418
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1564 GGGACGAGGACGAGGGCAACCACACCAGAACCAAAACCAGAACAACAACCACAGCCATAA 1623
Query 1419 c-aa--ccactaccacaaTGGGAGAGGAAATCATCATCATCA--A----------GTGGG 1463
| || |||| ||||||||||| ||||||||||||||||||| | |||||
Sbjct 1624 CCAAAACCACAACCACAATGGGCGAGGAAATCATCATCATCATCATCATCATCAAGTGGG 1683
Query 1464 AACACCACCTTCAAACAATCCAATGAACAACATGGAGCAACCAGGCATGGGGAAGCAGCA 1523
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1684 AACACAACCTTCGAACAATCCAATGAACAACATGGAGCAACCAGGCATGGGGAAACAGCA 1743
Query 1524 ACCACCTGGACCACGAATGCCTGATGGGACGAGAGGATTCTCGATGGGACGGGGAAAGCC 1583
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1744 ACCACCTGGACCACGAATGCCTGATGGGACCAGAGGATTCTCAATGGGACGGGGAAAGCC 1803
Query 1584 GGTCATGGTTCAGGCAGAGTGA 1605
||| ||||||||||||||||||
Sbjct 1804 GGTTATGGTTCAGGCAGAGTGA 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79266660555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5