BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg322281
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
AT2G46270.1 | Symbols: GBF3 | G-box binding factor 3 | chr2:190... 1836 0.0
> AT2G46270.1 | Symbols: GBF3 | G-box binding factor 3 | chr2:19000191-19003403
FORWARD LENGTH=1933
Length=1933
Score = 1836 bits (994), Expect = 0.0
Identities = 1097/1147 (96%), Gaps = 6/1147 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAATAGCAGCGAGGAACCAAAG---CCTACCAAATCAGAGAAACCTTCTTCAACT 57
||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| |
Sbjct 283 ATGGGAAATAGCAGCGAGGAACCAAAGCCTCCTACCAAATCAGATAAACCATCTTCACCC 342
Query 58 CCGGTGGATCAAACAAATGTTCATGTGTACCCTGATTGGGCAGCTATGCAGGCATATTAT 117
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 343 CCGGTGGATCAAACAAATGTTCATGTCTACCCTGATTGGGCAGCTATGCAGGCATATTAT 402
Query 118 GGTCCAAGAGTTGCAATGCCTCCTTATTACAATTCAGCTTTGGCTGCATCTGGTCATCCT 177
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 403 GGTCCAAGAGTAGCAATGCCTCCTTATTACAATTCAGCTATGGCTGCATCTGGTCATCCT 462
Query 178 CCTCCTCCTTACATGTGGAATCCTCAGCATATGATGTCACCATATGGAGCACCCTATGCT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CCTCCTCCTTACATGTGGAATCCTCAGCATATGATGTCACCATATGGAGCACCCTATGCT 522
Query 238 GCGGTTTATCCTCATGGAGGAGGAGTTTACGCTCATCCCGGAATTCCCATGGGATCACAG 297
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 523 GCTGTTTATCCTCATGGAGGAGGAGTTTACGCTCATCCCGGTATTCCCATGGGATCACTG 582
Query 298 CCTCAAGGTCAAAAGGCTCCACCTTTAACAACTCCGGGGACGCATTTGAGCATCGACACT 357
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 583 CCTCAAGGTCAAAAGGATCCACCTTTAACAACTCCGGGGACGCTTTTGAGCATCGACACT 642
Query 358 CCTACTAAATCTACAGGGAACACAGACAATGGATTGATGAAGAAGCTGAAAGAGTTTGAT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CCTACTAAATCTACAGGGAACACAGACAATGGATTGATGAAGAAGCTGAAAGAGTTTGAT 702
Query 418 GGGCTTGCTATGTCTCTAGGAAATGGAAATCCTGAAAGTGGTGCAGATGAACATAAACGA 477
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 703 GGGCTTGCTATGTCTCTAGGAAATGGGAATCCTGAAAATGGTGCAGATGAACATAAACGA 762
Query 478 TCACGGAACAGCTCAGAAACTGATGGTTCAACTGATGGAAGTGATGGGAATACAACTGGG 537
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 763 TCACGGAACAGCTCAGAAACTGATGGTTCTACTGATGGAAGTGATGGGAATACAACTGGG 822
Query 538 GCAGATGAACCGAAACTTAAAAGAAGTCGAGAGGGAACACCAACAAAAGATGGGAAACTA 597
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 823 GCAGATGAACCGAAACTTAAAAGAAGTCGAGAGGGAACTCCAACAAAAGATGGGAAACAA 882
Query 598 GTGGTACAATCTAGCTCATTTCATTCTGTTTCTCCGTCAAGTGGTGATACCGGCGTAAAA 657
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TTGGTTCAAGCTAGCTCATTTCATTCTGTTTCTCCGTCAAGTGGTGATACCGGCGTAAAA 942
Query 658 CTTATTCAAGGATC---AGCAATACTCTCTCCTGGTGTAAGTGCAAATTCCAACCCCTTC 714
|| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 943 CTCATTCAAGGATCTGGAGCTATACTCTCTCCTGGTGTAAGTGCAAATTCCAACCCCTTC 1002
Query 715 ATGTCACAATCTTTAGCCATGGTTCCTCCTGAAACTTGGCCTCAGAACGAGAGAGAACTG 774
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1003 ATGTCACAATCTTTAGCCATGGTTCCTCCTGAAACTTGGCTTCAGAACGAGAGAGAACTG 1062
Query 775 AAACGGGAGCGAAGGAAACAGTCTAATAGAGAATCTGCTAGAAGGTCAAGATTAAGAAAA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1063 AAACGGGAGCGAAGGAAACAGTCTAATAGAGAATCTGCTAGAAGGTCAAGATTAAGGAAA 1122
Query 835 CAGGCCGAGACGGAAGAACTTGCTAGGAAAGTCGAAGCCTTGACAGCCGAAAACATGGCA 894
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1123 CAGGCCGAGACAGAAGAACTTGCTAGGAAAGTGGAAGCCTTGACAGCCGAAAACATGGCA 1182
Query 895 CTAAGATCTGAACTAAACCAACTTAATGAGAAATCGGATAAACTAAGAGGAGCAAATGCA 954
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1183 TTAAGATCTGAACTAAACCAACTTAATGAGAAATCTGATAAACTAAGAGGAGCAAATGCA 1242
Query 955 ACCTTGTTGGACAAACTGAAATGCTCAGAACCTGAAAAGAGAGTCTGCGGGAATATGTTG 1014
|||||||||||||||||||||||||| ||||| |||||||||||| || |||||||||
Sbjct 1243 ACCTTGTTGGACAAACTGAAATGCTCGGAACCCGAAAAGAGAGTCCCCGCAAATATGTTG 1302
Query 1015 TCTAGAGTTAAAAACTCAGGAGCTGGAGACAAGAACAAGAACCAAGGAGACAATGATTCT 1074
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1303 TCTAGAGTTAAGAACTCAGGAGCTGGAGATAAGAACAAGAACCAAGGAGACAATGATTCT 1362
Query 1075 AACTCTACAAGCAAATTGTACCAACTGCTGGATACAAAGCCCCGAGCTAATGCTGTAGCT 1134
|||||||||||||||||| | |||||||| ||||| ||||| |||||||| || ||||||
Sbjct 1363 AACTCTACAAGCAAATTGCATCAACTGCTCGATACGAAGCCTCGAGCTAAAGCAGTAGCT 1422
Query 1135 GCGGGCT 1141
|| ||||
Sbjct 1423 GCAGGCT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56074008765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5